Variant report

Variant	rs2437388
Chromosome Location	chr10:26108504-26108505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:26107255-26110438	H1-neurons	neurons:	n/a	chr10:26110023-26110041

Variant related genes	Relation type
RNU6-632P	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10828876	0.99[ASN][1000 genomes]
rs10828877	0.99[ASN][1000 genomes]
rs10828878	0.97[ASN][1000 genomes]
rs10828882	0.93[ASN][1000 genomes]
rs10828883	0.89[ASN][1000 genomes]
rs10828884	0.93[ASN][1000 genomes]
rs10828885	0.92[ASN][1000 genomes]
rs10828886	0.93[ASN][1000 genomes]
rs11014755	0.87[ASN][1000 genomes]
rs11014757	0.86[ASN][1000 genomes]
rs11014759	0.88[ASN][1000 genomes]
rs11014760	0.88[ASN][1000 genomes]
rs11014763	0.87[CHB][hapmap];0.98[ASN][1000 genomes]
rs11014767	1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs11014768	0.94[ASN][1000 genomes]
rs11014770	0.97[ASN][1000 genomes]
rs11014772	0.94[ASN][1000 genomes]
rs11014773	0.94[ASN][1000 genomes]
rs11014778	0.93[ASN][1000 genomes]
rs11014779	0.93[ASN][1000 genomes]
rs11014780	0.93[ASN][1000 genomes]
rs11014781	0.93[ASN][1000 genomes]
rs11014783	0.93[ASN][1000 genomes]
rs11014787	0.93[ASN][1000 genomes]
rs11014798	0.88[ASN][1000 genomes]
rs12413602	0.83[ASN][1000 genomes]
rs12571781	0.88[ASN][1000 genomes]
rs17812563	0.91[ASN][1000 genomes]
rs17812660	0.88[CHB][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs2437383	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2437384	0.87[CHB][hapmap]
rs2437385	0.86[EUR][1000 genomes]
rs2437387	0.86[EUR][1000 genomes]
rs2437389	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2437390	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437397	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437398	0.84[EUR][1000 genomes]
rs2437399	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437400	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437417	0.81[EUR][1000 genomes]
rs2505428	0.84[EUR][1000 genomes]
rs2505432	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2505435	0.86[EUR][1000 genomes]
rs2505436	0.84[EUR][1000 genomes]
rs2505437	0.84[EUR][1000 genomes]
rs2505491	0.81[EUR][1000 genomes]
rs2917190	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3006261	0.84[EUR][1000 genomes]
rs3006268	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3006269	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74125991	0.94[ASN][1000 genomes]
rs9299809	0.84[EUR][1000 genomes]
rs9299810	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26106800-26109400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:26107000-26109800	Weak transcription	NH-A	brain
4	chr10:26107200-26109200	Weak transcription	Brain Germinal Matrix	brain
5	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:26108000-26109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:26108000-26109600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:26108400-26109800	Weak transcription	Dnd41	blood
9	chr10:26108400-26110000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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