Variant report

Variant	rs10828876
Chromosome Location	chr10:26110653-26110654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26109191..26112168-chr10:26115636..26117848,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10828877	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828878	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828882	0.94[ASN][1000 genomes]
rs10828883	0.90[ASN][1000 genomes]
rs10828884	0.94[ASN][1000 genomes]
rs10828885	0.93[ASN][1000 genomes]
rs10828886	0.94[ASN][1000 genomes]
rs11014755	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014757	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014759	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014760	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014763	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014767	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014768	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014770	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014772	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014773	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014778	0.94[ASN][1000 genomes]
rs11014779	0.94[ASN][1000 genomes]
rs11014780	0.94[ASN][1000 genomes]
rs11014781	0.94[ASN][1000 genomes]
rs11014783	0.94[ASN][1000 genomes]
rs11014787	0.94[ASN][1000 genomes]
rs11014798	0.89[ASN][1000 genomes]
rs12413602	0.84[ASN][1000 genomes]
rs12571781	0.89[ASN][1000 genomes]
rs17812563	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17812660	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437388	0.99[ASN][1000 genomes]
rs2437389	0.98[ASN][1000 genomes]
rs2437390	0.99[ASN][1000 genomes]
rs2437397	0.97[ASN][1000 genomes]
rs2437399	0.97[ASN][1000 genomes]
rs2437400	0.97[ASN][1000 genomes]
rs2917190	0.94[ASN][1000 genomes]
rs3006268	0.94[ASN][1000 genomes]
rs3006269	0.94[ASN][1000 genomes]
rs74125991	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:26110200-26113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:26110400-26117000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:26110400-26118800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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