Variant report

Variant	rs2437399
Chromosome Location	chr10:26119044-26119045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10828876	0.97[ASN][1000 genomes]
rs10828877	0.97[ASN][1000 genomes]
rs10828878	0.99[ASN][1000 genomes]
rs10828882	0.95[ASN][1000 genomes]
rs10828883	0.91[ASN][1000 genomes]
rs10828884	0.95[ASN][1000 genomes]
rs10828885	0.94[ASN][1000 genomes]
rs10828886	0.95[ASN][1000 genomes]
rs11014755	0.86[ASN][1000 genomes]
rs11014757	0.84[ASN][1000 genomes]
rs11014759	0.87[ASN][1000 genomes]
rs11014760	0.87[ASN][1000 genomes]
rs11014762	0.88[CHD][hapmap]
rs11014763	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11014767	0.97[ASN][1000 genomes]
rs11014768	0.92[ASN][1000 genomes]
rs11014770	0.99[ASN][1000 genomes]
rs11014772	0.95[ASN][1000 genomes]
rs11014773	0.95[ASN][1000 genomes]
rs11014778	0.95[ASN][1000 genomes]
rs11014779	0.95[ASN][1000 genomes]
rs11014780	0.95[ASN][1000 genomes]
rs11014781	0.95[ASN][1000 genomes]
rs11014783	0.95[ASN][1000 genomes]
rs11014787	0.95[ASN][1000 genomes]
rs11014798	0.90[ASN][1000 genomes]
rs12413602	0.85[ASN][1000 genomes]
rs12571781	0.90[ASN][1000 genomes]
rs17812563	0.89[ASN][1000 genomes]
rs17812660	0.94[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs2437383	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs2437384	0.94[CHB][hapmap]
rs2437385	0.84[EUR][1000 genomes]
rs2437387	0.84[EUR][1000 genomes]
rs2437388	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437389	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2437390	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437397	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437398	0.86[EUR][1000 genomes]
rs2437400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505428	0.82[EUR][1000 genomes]
rs2505431	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2505432	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs2505435	0.84[EUR][1000 genomes]
rs2505436	0.82[EUR][1000 genomes]
rs2505437	0.86[EUR][1000 genomes]
rs2917190	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3006261	0.82[EUR][1000 genomes]
rs3006268	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3006269	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74125991	0.95[ASN][1000 genomes]
rs751006	0.88[CHD][hapmap]
rs751007	0.91[CHD][hapmap]
rs9299809	0.82[EUR][1000 genomes]
rs9299810	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26117000-26120800	Enhancers	Brain Germinal Matrix	brain
2	chr10:26117800-26119800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:26118000-26119200	Weak transcription	Fetal Kidney	kidney
4	chr10:26118400-26120600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:26118800-26122400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:26119000-26120200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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