Variant report

Variant	rs12413602
Chromosome Location	chr10:26156310-26156311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10828876	0.84[ASN][1000 genomes]
rs10828877	0.84[ASN][1000 genomes]
rs10828878	0.86[ASN][1000 genomes]
rs10828882	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828883	0.87[ASN][1000 genomes]
rs10828884	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828885	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828886	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014762	0.83[CHB][hapmap]
rs11014763	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014767	0.84[ASN][1000 genomes]
rs11014770	0.86[ASN][1000 genomes]
rs11014772	0.89[ASN][1000 genomes]
rs11014773	0.89[ASN][1000 genomes]
rs11014778	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014779	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014780	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014781	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014783	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014787	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014798	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12571781	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17812660	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2437384	0.88[CHB][hapmap]
rs2437388	0.83[ASN][1000 genomes]
rs2437389	0.83[ASN][1000 genomes]
rs2437390	0.83[ASN][1000 genomes]
rs2437397	0.85[ASN][1000 genomes]
rs2437399	0.85[ASN][1000 genomes]
rs2437400	0.85[ASN][1000 genomes]
rs2917190	0.88[ASN][1000 genomes]
rs3006268	0.88[ASN][1000 genomes]
rs3006269	0.88[ASN][1000 genomes]
rs74125991	0.89[ASN][1000 genomes]
rs751006	0.83[CHB][hapmap]
rs751007	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26154800-26157000	Weak transcription	Brain Germinal Matrix	brain

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