Variant report

Variant	rs11014762
Chromosome Location	chr10:26103156-26103157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10764586	0.82[ASN][1000 genomes]
rs10828887	0.83[ASN][1000 genomes]
rs10828892	0.82[ASN][1000 genomes]
rs11014763	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs11014784	0.82[ASN][1000 genomes]
rs1123383	0.86[ASN][1000 genomes]
rs11595132	0.83[EUR][1000 genomes]
rs16926362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17665040	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17737729	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17812660	0.85[CHB][hapmap]
rs2255495	0.95[ASN][1000 genomes]
rs2367981	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2367982	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2437384	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2437386	0.94[ASN][1000 genomes]
rs2437392	0.97[ASN][1000 genomes]
rs2437394	0.95[ASN][1000 genomes]
rs2437395	0.95[ASN][1000 genomes]
rs2437396	0.94[ASN][1000 genomes]
rs2505431	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2505438	0.95[ASN][1000 genomes]
rs2505440	0.95[ASN][1000 genomes]
rs2917186	0.84[ASN][1000 genomes]
rs3006249	0.86[ASN][1000 genomes]
rs3006253	0.81[ASN][1000 genomes]
rs4418705	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4498875	0.84[EUR][1000 genomes]
rs4749076	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4749077	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4749078	0.82[EUR][1000 genomes]
rs55918230	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57510325	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57609789	0.83[EUR][1000 genomes]
rs61849513	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61849515	0.88[EUR][1000 genomes]
rs61849518	0.83[EUR][1000 genomes]
rs61849523	0.81[EUR][1000 genomes]
rs7073148	0.81[ASN][1000 genomes]
rs7079884	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7080778	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7084670	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7089832	0.81[ASN][1000 genomes]
rs751006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26088200-26106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:26100400-26104000	Weak transcription	NH-A	brain
3	chr10:26100400-26104600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:26101000-26104400	Weak transcription	Brain Germinal Matrix	brain
5	chr10:26102200-26105000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26102800-26103800	Weak transcription	Dnd41	blood

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