Variant report

Variant	rs2437394
Chromosome Location	chr10:26124855-26124856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764586	0.85[ASN][1000 genomes]
rs10828887	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828892	0.85[ASN][1000 genomes]
rs11014762	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs11014763	0.80[CHB][hapmap];0.88[CHD][hapmap]
rs11014784	0.87[ASN][1000 genomes]
rs1123383	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16926362	0.94[ASN][1000 genomes]
rs17812660	0.80[CHB][hapmap]
rs2255495	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437386	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2437392	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437395	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437396	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2505431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2505438	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505440	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2917186	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3006249	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3006253	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7073148	0.84[ASN][1000 genomes]
rs7089832	0.84[ASN][1000 genomes]
rs751006	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs751007	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26120800-26125200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26121600-26125200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26124800-26125600	Bivalent Enhancer	Fetal Brain Male	brain

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