Variant report

Variant	rs17812660
Chromosome Location	chr10:26109936-26109937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:26109191-26110284	H1-neurons	neurons:	n/a	n/a
2	REST	chr10:26107255-26110438	H1-neurons	neurons:	n/a	chr10:26110023-26110041
3	MAFK	chr10:26109934-26110121	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr10:26109192-26110336	H1-neurons	neurons:	n/a	n/a
5	IRF1	chr10:26109818-26110082	K562	blood:	n/a	chr10:26109949-26109962 chr10:26109944-26109958 chr10:26109948-26109962 chr10:26109947-26109961 chr10:26109943-26109957 chr10:26109949-26109962 chr10:26109951-26109961 chr10:26109953-26109967 chr10:26109949-26109962 chr10:26109943-26109963 chr10:26109945-26109959 chr10:26109951-26109962 chr10:26109951-26109965 chr10:26109944-26109957
6	REST	chr10:26109181-26110275	H1-neurons	neurons:	n/a	chr10:26110023-26110041

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26109191..26112168-chr10:26115636..26117848,2	K562	blood:

Variant related genes	Relation type
RNU6-632P	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10828876	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828878	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828882	0.94[ASN][1000 genomes]
rs10828883	0.90[ASN][1000 genomes]
rs10828884	0.94[ASN][1000 genomes]
rs10828885	0.93[ASN][1000 genomes]
rs10828886	0.94[ASN][1000 genomes]
rs11014755	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014757	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014759	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014760	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014762	0.85[CHB][hapmap]
rs11014763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014767	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014772	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014773	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014778	0.94[ASN][1000 genomes]
rs11014779	0.94[ASN][1000 genomes]
rs11014780	0.94[ASN][1000 genomes]
rs11014781	0.94[ASN][1000 genomes]
rs11014783	0.94[ASN][1000 genomes]
rs11014787	0.94[ASN][1000 genomes]
rs11014798	0.89[ASN][1000 genomes]
rs12413602	0.84[ASN][1000 genomes]
rs12571781	0.89[ASN][1000 genomes]
rs17812563	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2437384	0.89[CHB][hapmap]
rs2437388	0.88[CHB][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs2437389	0.98[ASN][1000 genomes]
rs2437390	0.99[ASN][1000 genomes]
rs2437397	0.97[ASN][1000 genomes]
rs2437399	0.97[ASN][1000 genomes]
rs2437400	0.97[ASN][1000 genomes]
rs2505431	0.80[CHB][hapmap]
rs2917190	0.94[ASN][1000 genomes]
rs3006268	0.94[ASN][1000 genomes]
rs3006269	0.94[ASN][1000 genomes]
rs74125991	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs751006	0.85[CHB][hapmap]
rs751007	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:26108400-26110000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:26109400-26110400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:26109400-26110400	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:26109400-26110400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:26109600-26110000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr10:26109600-26110200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:26109600-26110200	Active TSS	Monocytes-CD14+_RO01746	blood
13	chr10:26109800-26110000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:26109800-26110000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:26109800-26110200	Active TSS	Primary B cells from cord blood	blood
16	chr10:26109800-26110200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:26109800-26110200	Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr10:26109800-26110200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:26109800-26110200	Active TSS	Brain Angular Gyrus	brain
20	chr10:26109800-26110200	Active TSS	Brain Hippocampus Middle	brain
21	chr10:26109800-26110200	Active TSS	Brain Substantia Nigra	brain
22	chr10:26109800-26110200	Active TSS	Duodenum Mucosa	Duodenum
23	chr10:26109800-26110200	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr10:26109800-26110200	Active TSS	Right Atrium	heart
25	chr10:26109800-26110200	Active TSS	A549	lung
26	chr10:26109800-26110200	Enhancers	NH-A	brain
27	chr10:26109800-26110400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr10:26109800-26110400	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr10:26109800-26110400	Enhancers	Brain Germinal Matrix	brain
30	chr10:26109800-26110400	Enhancers	Dnd41	blood

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