Variant report

Variant	rs751007
Chromosome Location	chr10:26105828-26105829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:26104888-26105992	H1-neurons	neurons:	n/a	n/a
2	REST	chr10:26104611-26107014	H1-neurons	neurons:	n/a	chr10:26106907-26106925
3	KAP1	chr10:26104266-26106052	HEK293	kidney:	n/a	n/a
4	POLR2A	chr10:26104894-26105995	H1-neurons	neurons:	n/a	n/a
5	POLR2A	chr10:26104804-26105991	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26104636..26107048-chr17:79824825..79827095,2	MCF-7	breast:

Variant related genes	Relation type
RNA5SP306	TF binding region
ENSG00000262413	Chromatin interaction
ENSG00000141522	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10764586	0.84[ASN][1000 genomes]
rs10828887	0.84[ASN][1000 genomes]
rs10828892	0.84[ASN][1000 genomes]
rs11014762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014763	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs11014784	0.84[ASN][1000 genomes]
rs1123383	0.87[ASN][1000 genomes]
rs11595132	0.84[EUR][1000 genomes]
rs12251932	0.81[EUR][1000 genomes]
rs16926362	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17665040	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17737729	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17812660	0.85[CHB][hapmap]
rs2255495	0.97[ASN][1000 genomes]
rs2367981	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2367982	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2437384	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2437386	0.96[ASN][1000 genomes]
rs2437392	0.98[ASN][1000 genomes]
rs2437394	0.97[ASN][1000 genomes]
rs2437395	0.97[ASN][1000 genomes]
rs2437396	0.95[ASN][1000 genomes]
rs2505431	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2505438	0.97[ASN][1000 genomes]
rs2505440	0.97[ASN][1000 genomes]
rs2917186	0.85[ASN][1000 genomes]
rs3006249	0.87[ASN][1000 genomes]
rs3006253	0.82[ASN][1000 genomes]
rs4418705	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4498875	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4749076	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4749077	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4749078	0.83[EUR][1000 genomes]
rs55918230	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57510325	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57609789	0.84[EUR][1000 genomes]
rs61849513	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61849515	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61849518	0.85[EUR][1000 genomes]
rs61849523	0.82[EUR][1000 genomes]
rs7073148	0.82[ASN][1000 genomes]
rs7079884	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7080778	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7084670	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7089832	0.82[ASN][1000 genomes]
rs751006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26088200-26106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:26103800-26108400	Enhancers	Dnd41	blood
3	chr10:26104200-26106200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr10:26104600-26107200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:26104600-26108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:26104800-26108400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:26105000-26107000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:26105000-26108000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:26105200-26106200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:26105200-26108400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:26105400-26106200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:26105400-26106200	Bivalent Enhancer	Fetal Brain Male	brain
13	chr10:26105400-26106600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:26105600-26106200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:26105600-26106800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:26105600-26107000	Enhancers	NH-A	brain
17	chr10:26105800-26106200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:26105800-26107200	Enhancers	Brain Germinal Matrix	brain

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