Variant report

Variant	rs61882413
Chromosome Location	chr11:17859503-17859504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1029499	0.89[ASN][1000 genomes]
rs10832863	0.87[ASN][1000 genomes]
rs2237939	0.88[ASN][1000 genomes]
rs59143224	0.96[EUR][1000 genomes]
rs59379521	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61882415	0.96[EUR][1000 genomes]
rs61882416	0.86[EUR][1000 genomes]
rs61882417	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110032	0.87[ASN][1000 genomes]
rs7131344	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
3	chr11:17833800-17867400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:17835000-17869400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:17838400-17971600	Weak transcription	Gastric	stomach
7	chr11:17838800-17860800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:17844800-17862000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:17850400-17866200	Weak transcription	Aorta	Aorta
10	chr11:17851200-17867000	Weak transcription	Primary T cells from cord blood	blood
11	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr11:17852200-17867800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:17852200-17875800	Weak transcription	Esophagus	oesophagus
14	chr11:17852400-17861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:17853000-17870800	Weak transcription	Spleen	Spleen
16	chr11:17853800-17882400	Weak transcription	Pancreas	Pancrea
17	chr11:17854400-17867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:17856000-17867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:17856400-17866000	Weak transcription	HepG2	liver
20	chr11:17857200-17862000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:17859200-17864800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr11:17859400-17863000	Enhancers	Psoas Muscle	Psoas
24	chr11:17859400-17864400	Enhancers	Skeletal Muscle Female	skeletal muscle

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