Variant report

Variant	rs59143224
Chromosome Location	chr11:17861074-17861075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1029498	0.90[ASN][1000 genomes]
rs16934735	0.93[ASN][1000 genomes]
rs2023902	0.92[ASN][1000 genomes]
rs4402275	0.92[ASN][1000 genomes]
rs59379521	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882413	0.96[EUR][1000 genomes]
rs61882415	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882416	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882417	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67445779	0.92[ASN][1000 genomes]
rs68077051	0.92[ASN][1000 genomes]
rs7110047	0.90[ASN][1000 genomes]
rs7131344	0.95[EUR][1000 genomes]
rs72873810	0.95[ASN][1000 genomes]
rs7484179	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
3	chr11:17833800-17867400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:17835000-17869400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:17838400-17971600	Weak transcription	Gastric	stomach
7	chr11:17844800-17862000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:17850400-17866200	Weak transcription	Aorta	Aorta
9	chr11:17851200-17867000	Weak transcription	Primary T cells from cord blood	blood
10	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:17852200-17867800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:17852200-17875800	Weak transcription	Esophagus	oesophagus
13	chr11:17853000-17870800	Weak transcription	Spleen	Spleen
14	chr11:17853800-17882400	Weak transcription	Pancreas	Pancrea
15	chr11:17854400-17867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:17856000-17867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:17856400-17866000	Weak transcription	HepG2	liver
18	chr11:17857200-17862000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:17859200-17864800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:17859400-17863000	Enhancers	Psoas Muscle	Psoas
22	chr11:17859400-17864400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:17860000-17873600	Weak transcription	Right Ventricle	heart
24	chr11:17860400-17861800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:17860400-17862200	Enhancers	Brain Hippocampus Middle	brain
26	chr11:17860400-17862400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:17860600-17862200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:17860800-17861600	Enhancers	Brain Anterior Caudate	brain
29	chr11:17860800-17862200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:17860800-17862200	Enhancers	Brain Angular Gyrus	brain
31	chr11:17861000-17861200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:17861000-17861400	Enhancers	Left Ventricle	heart
33	chr11:17861000-17862000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:17861000-17862200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:17861000-17862200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:17861000-17862200	Enhancers	Right Atrium	heart
37	chr11:17861000-17862400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:17861000-17862400	Enhancers	HMEC	breast
39	chr11:17861000-17863400	Enhancers	Fetal Muscle Leg	muscle

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