Variant report

Variant	rs72873810
Chromosome Location	chr11:17867501-17867502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17867031..17869895-chr11:17870240..17872137,3	MCF-7	breast:
2	chr11:17865463..17868129-chr11:17879075..17880713,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1029498	0.95[ASN][1000 genomes]
rs16934735	0.95[ASN][1000 genomes]
rs2023902	0.97[ASN][1000 genomes]
rs4402275	0.97[ASN][1000 genomes]
rs59143224	0.95[ASN][1000 genomes]
rs61882415	0.95[ASN][1000 genomes]
rs61882416	0.95[ASN][1000 genomes]
rs67445779	0.97[ASN][1000 genomes]
rs68077051	0.97[ASN][1000 genomes]
rs7110047	0.95[ASN][1000 genomes]
rs7484179	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17835000-17869400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:17838400-17971600	Weak transcription	Gastric	stomach
4	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:17852200-17867800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:17852200-17875800	Weak transcription	Esophagus	oesophagus
7	chr11:17853000-17870800	Weak transcription	Spleen	Spleen
8	chr11:17853800-17882400	Weak transcription	Pancreas	Pancrea
9	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:17860000-17873600	Weak transcription	Right Ventricle	heart
11	chr11:17862200-17868200	Weak transcription	Brain Angular Gyrus	brain
12	chr11:17862200-17868600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:17862200-17889000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:17862200-17895400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:17862400-17867600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:17862400-17867800	Weak transcription	Thymus	Thymus
17	chr11:17863200-17868000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:17863400-17867800	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:17863800-17886200	Weak transcription	Fetal Intestine Large	intestine
20	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:17864200-17868200	Weak transcription	Fetal Thymus	thymus
22	chr11:17864400-17894600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:17864400-17944800	Weak transcription	Ovary	ovary
24	chr11:17864800-17899400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:17865000-17884400	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:17865400-17871800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:17865600-17867600	Weak transcription	Lung	lung
28	chr11:17866000-17868000	Strong transcription	HepG2	liver
29	chr11:17866000-17894600	Weak transcription	Adipose Nuclei	Adipose
30	chr11:17866200-17877400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:17866200-17894600	Weak transcription	Liver	Liver
32	chr11:17866400-17868600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:17866400-17869000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:17866400-17869000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:17866600-17868000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:17866600-17868000	Enhancers	Hela-S3	cervix
37	chr11:17866600-17868000	Enhancers	HSMM	muscle
38	chr11:17866600-17868200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:17866600-17868400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:17866600-17868600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr11:17866600-17868600	Enhancers	HMEC	breast
42	chr11:17866600-17868800	Enhancers	NHLF	lung
43	chr11:17866600-17888800	Weak transcription	Dnd41	blood
44	chr11:17866600-17895400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:17866800-17867800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:17866800-17868000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:17866800-17868000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:17866800-17868000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:17866800-17868000	Enhancers	NHDF-Ad	bronchial
50	chr11:17866800-17868000	Enhancers	NHEK	skin

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