Variant report

Variant	rs67445779
Chromosome Location	chr11:17879397-17879398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17865463..17868129-chr11:17879075..17880713,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1029498	0.98[ASN][1000 genomes]
rs16934735	0.95[ASN][1000 genomes]
rs2023902	1.00[ASN][1000 genomes]
rs4402275	1.00[ASN][1000 genomes]
rs59143224	0.92[ASN][1000 genomes]
rs61882415	0.92[ASN][1000 genomes]
rs61882416	0.92[ASN][1000 genomes]
rs68077051	1.00[ASN][1000 genomes]
rs7110047	0.98[ASN][1000 genomes]
rs72873810	0.97[ASN][1000 genomes]
rs7484179	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:17838400-17971600	Weak transcription	Gastric	stomach
3	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:17853800-17882400	Weak transcription	Pancreas	Pancrea
5	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:17862200-17889000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:17862200-17895400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:17863800-17886200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:17864400-17894600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:17864400-17944800	Weak transcription	Ovary	ovary
12	chr11:17864800-17899400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:17865000-17884400	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:17866000-17894600	Weak transcription	Adipose Nuclei	Adipose
15	chr11:17866200-17894600	Weak transcription	Liver	Liver
16	chr11:17866600-17888800	Weak transcription	Dnd41	blood
17	chr11:17866600-17895400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:17867800-17890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:17868400-17895200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:17868600-17882400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:17868600-17894800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:17868600-17914000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:17868800-17882400	Weak transcription	Aorta	Aorta
24	chr11:17868800-17887600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:17868800-17894600	Weak transcription	Brain Anterior Caudate	brain
26	chr11:17868800-17894800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:17868800-17895200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:17869000-17895400	Weak transcription	Lung	lung
29	chr11:17869000-17909600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:17869000-17916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:17869400-17887600	Weak transcription	Fetal Thymus	thymus
32	chr11:17870600-17881400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:17872600-17926600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:17873000-17895200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:17873800-17884000	Weak transcription	Left Ventricle	heart
36	chr11:17874000-17887400	Weak transcription	Right Ventricle	heart
37	chr11:17874400-17882200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:17875000-17879600	Weak transcription	Primary B cells from cord blood	blood
39	chr11:17875200-17882400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:17876400-17900200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:17876600-17895200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr11:17876800-17914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:17877800-17896400	Weak transcription	HSMM	muscle
44	chr11:17878000-17879400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr11:17878000-17879800	Strong transcription	HepG2	liver
46	chr11:17878000-17882400	Weak transcription	HSMMtube	muscle
47	chr11:17878000-17883000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:17878000-17895400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:17878200-17879400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:17878200-17883200	Weak transcription	Thymus	Thymus

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