Variant report

Variant	rs61882417
Chromosome Location	chr11:17863138-17863139
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1029499	0.91[ASN][1000 genomes]
rs10832863	0.89[ASN][1000 genomes]
rs2237939	0.90[ASN][1000 genomes]
rs59143224	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59379521	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61882413	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61882415	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61882416	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110032	0.90[ASN][1000 genomes]
rs7131344	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:17833800-17867400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:17835000-17869400	Weak transcription	Fetal Intestine Small	intestine
4	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:17838400-17971600	Weak transcription	Gastric	stomach
6	chr11:17850400-17866200	Weak transcription	Aorta	Aorta
7	chr11:17851200-17867000	Weak transcription	Primary T cells from cord blood	blood
8	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:17852200-17867800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:17852200-17875800	Weak transcription	Esophagus	oesophagus
11	chr11:17853000-17870800	Weak transcription	Spleen	Spleen
12	chr11:17853800-17882400	Weak transcription	Pancreas	Pancrea
13	chr11:17854400-17867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:17856000-17867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:17856400-17866000	Weak transcription	HepG2	liver
16	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:17859200-17864800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:17859400-17864400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:17860000-17873600	Weak transcription	Right Ventricle	heart
20	chr11:17861000-17863400	Enhancers	Fetal Muscle Leg	muscle
21	chr11:17861400-17867400	Weak transcription	Left Ventricle	heart
22	chr11:17861600-17866800	Weak transcription	Brain Anterior Caudate	brain
23	chr11:17861800-17864600	Weak transcription	Brain Substantia Nigra	brain
24	chr11:17861800-17866800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:17862000-17866800	Weak transcription	HSMMtube	muscle
26	chr11:17862000-17866800	Weak transcription	Osteobl	bone
27	chr11:17862000-17867400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:17862200-17864200	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:17862200-17866400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:17862200-17866400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:17862200-17866600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:17862200-17866600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:17862200-17866600	Weak transcription	HSMM	muscle
34	chr11:17862200-17866800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:17862200-17867400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:17862200-17868200	Weak transcription	Brain Angular Gyrus	brain
37	chr11:17862200-17868600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:17862200-17889000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:17862200-17895400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:17862400-17864200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:17862400-17866600	Weak transcription	HMEC	breast
42	chr11:17862400-17867400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:17862400-17867600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:17862400-17867800	Weak transcription	Thymus	Thymus
45	chr11:17863000-17863800	Weak transcription	Psoas Muscle	Psoas

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