Variant report

Variant	rs61963301
Chromosome Location	chr13:110894685-110894686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11842085	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843610	0.98[EUR][1000 genomes]
rs34808582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41275104	0.90[EUR][1000 genomes]
rs41275106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475520	0.81[EUR][1000 genomes]
rs55698841	0.82[EUR][1000 genomes]
rs56066148	0.90[EUR][1000 genomes]
rs56081954	0.90[EUR][1000 genomes]
rs56116457	0.87[EUR][1000 genomes]
rs56152426	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366911	0.90[EUR][1000 genomes]
rs604733	0.82[EUR][1000 genomes]
rs61963293	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963294	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963295	0.81[EUR][1000 genomes]
rs61963304	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963305	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963306	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963307	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963326	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963327	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492249	0.81[EUR][1000 genomes]
rs6492250	0.81[EUR][1000 genomes]
rs6492251	0.81[EUR][1000 genomes]
rs656034	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679248	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68079483	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318128	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318692	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319995	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320618	0.98[EUR][1000 genomes]
rs7331362	0.81[EUR][1000 genomes]
rs7332643	0.81[EUR][1000 genomes]
rs7332644	0.81[EUR][1000 genomes]
rs7988985	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989246	0.81[EUR][1000 genomes]
rs7989549	0.81[EUR][1000 genomes]
rs7995509	0.81[EUR][1000 genomes]
rs7995601	0.81[EUR][1000 genomes]
rs7995873	0.81[EUR][1000 genomes]
rs7996908	0.82[EUR][1000 genomes]
rs7999378	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999607	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999790	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583474	0.90[EUR][1000 genomes]
rs9588121	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:110881400-110894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:110881600-110900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:110882400-110900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:110882600-110898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:110882600-110899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:110882800-110900600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:110883200-110895000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:110884200-110902200	Weak transcription	HMEC	breast
12	chr13:110884600-110902400	Weak transcription	NHEK	skin
13	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:110885200-110899000	Weak transcription	Fetal Intestine Large	intestine
15	chr13:110886600-110896000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:110888400-110896800	Strong transcription	Osteobl	bone
17	chr13:110889600-110900400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr13:110889600-110900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:110889600-110904200	Enhancers	NHDF-Ad	bronchial
20	chr13:110889800-110896800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:110890000-110897000	Strong transcription	NH-A	brain
22	chr13:110890200-110899400	Enhancers	Left Ventricle	heart
23	chr13:110890800-110901800	Enhancers	Fetal Heart	heart
24	chr13:110891000-110896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:110891000-110896800	Weak transcription	Small Intestine	intestine
26	chr13:110891400-110896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr13:110891400-110896800	Weak transcription	Liver	Liver
28	chr13:110891400-110908600	Weak transcription	Psoas Muscle	Psoas
29	chr13:110891600-110895000	Weak transcription	Aorta	Aorta
30	chr13:110891600-110896400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr13:110891600-110896800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:110891800-110895000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr13:110891800-110896000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:110891800-110896800	Weak transcription	Fetal Intestine Small	intestine
35	chr13:110892000-110895600	Enhancers	Right Atrium	heart
36	chr13:110892200-110895600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:110892200-110898400	Weak transcription	Fetal Lung	lung
38	chr13:110892200-110899000	Weak transcription	Fetal Kidney	kidney
39	chr13:110892400-110894800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:110892400-110895000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr13:110892400-110895200	Weak transcription	Colon Smooth Muscle	Colon
42	chr13:110892600-110895600	Strong transcription	Fetal Stomach	stomach
43	chr13:110892600-110896400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:110892600-110897800	Genic enhancers	Fetal Muscle Leg	muscle
45	chr13:110892800-110896000	Weak transcription	NHLF	lung
46	chr13:110892800-110896800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:110892800-110896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr13:110893000-110896800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:110893000-110897400	Weak transcription	Spleen	Spleen
50	chr13:110893000-110898600	Weak transcription	Gastric	stomach

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