Variant report

Variant	rs61963306
Chromosome Location	chr13:110899777-110899778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110899641..110900501-chr13:111064285..111065117,5	MCF-7	breast:
2	chr13:110884811..110886998-chr13:110899690..110902649,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11842085	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843610	0.92[EUR][1000 genomes]
rs34808582	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41275104	0.85[EUR][1000 genomes]
rs41275106	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56066148	0.85[EUR][1000 genomes]
rs56081954	0.85[EUR][1000 genomes]
rs56116457	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56152426	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366911	0.85[EUR][1000 genomes]
rs61963293	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963294	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963301	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963304	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963326	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963327	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656034	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679248	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68079483	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318128	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318692	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320618	0.92[EUR][1000 genomes]
rs7988985	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999378	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999607	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999790	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583474	0.85[EUR][1000 genomes]
rs9588121	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:110881600-110900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:110882400-110900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:110882800-110900600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:110884200-110902200	Weak transcription	HMEC	breast
7	chr13:110884600-110902400	Weak transcription	NHEK	skin
8	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:110889600-110900400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:110889600-110900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:110889600-110904200	Enhancers	NHDF-Ad	bronchial
12	chr13:110890800-110901800	Enhancers	Fetal Heart	heart
13	chr13:110891400-110908600	Weak transcription	Psoas Muscle	Psoas
14	chr13:110894400-110900400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:110894600-110912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:110895200-110903800	Enhancers	Colon Smooth Muscle	Colon
17	chr13:110895600-110903800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:110896000-110899800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:110896000-110900600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:110896000-110904400	Enhancers	NHLF	lung
21	chr13:110896200-110904400	Enhancers	Rectal Smooth Muscle	rectum
22	chr13:110896800-110899800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr13:110896800-110902200	Genic enhancers	Osteobl	bone
24	chr13:110896800-110904400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:110897400-110899800	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:110897400-110900800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr13:110897400-110901000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:110897600-110900400	Enhancers	Stomach Smooth Muscle	stomach
29	chr13:110897800-110900000	Enhancers	Fetal Muscle Leg	muscle
30	chr13:110897800-110900800	Enhancers	HSMM	muscle
31	chr13:110897800-110914200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr13:110897800-110914800	Weak transcription	Stomach Mucosa	stomach
33	chr13:110898200-110900800	Weak transcription	Aorta	Aorta
34	chr13:110898200-110900800	Weak transcription	Spleen	Spleen
35	chr13:110898600-110901200	Enhancers	HUVEC	blood vessel
36	chr13:110898800-110900000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr13:110898800-110900600	Enhancers	Fetal Stomach	stomach
38	chr13:110898800-110900800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr13:110898800-110900800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:110898800-110901000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr13:110899000-110899800	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr13:110899000-110900000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:110899000-110900600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr13:110899000-110900600	Enhancers	Fetal Kidney	kidney
45	chr13:110899000-110901000	Enhancers	Fetal Brain Male	brain
46	chr13:110899000-110901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr13:110899000-110902800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr13:110899000-110904200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:110899200-110900000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr13:110899200-110900400	Enhancers	Adipose Nuclei	Adipose

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