Variant report

Variant	rs9588121
Chromosome Location	chr13:110888274-110888275
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11842085	0.85[EUR][1000 genomes]
rs11843610	0.85[EUR][1000 genomes]
rs34808582	0.86[EUR][1000 genomes]
rs41275106	0.86[EUR][1000 genomes]
rs475520	0.85[EUR][1000 genomes]
rs536195	0.86[EUR][1000 genomes]
rs55698841	0.85[EUR][1000 genomes]
rs56116457	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152426	0.86[EUR][1000 genomes]
rs604733	0.85[EUR][1000 genomes]
rs61963293	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61963294	0.95[EUR][1000 genomes]
rs61963295	0.85[EUR][1000 genomes]
rs61963301	0.86[EUR][1000 genomes]
rs61963304	0.84[EUR][1000 genomes]
rs61963305	0.81[EUR][1000 genomes]
rs61963306	0.81[EUR][1000 genomes]
rs61963307	0.81[EUR][1000 genomes]
rs6492249	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs6492250	0.85[EUR][1000 genomes]
rs6492251	0.85[EUR][1000 genomes]
rs656034	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs679248	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68079483	0.85[EUR][1000 genomes]
rs7318128	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs7318692	0.84[EUR][1000 genomes]
rs7319995	0.84[EUR][1000 genomes]
rs7320618	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs7331362	0.85[EUR][1000 genomes]
rs7332643	0.85[EUR][1000 genomes]
rs7332644	0.85[EUR][1000 genomes]
rs7988985	0.95[EUR][1000 genomes]
rs7989246	0.85[EUR][1000 genomes]
rs7989549	0.85[EUR][1000 genomes]
rs7995509	0.85[EUR][1000 genomes]
rs7995601	0.84[EUR][1000 genomes]
rs7995873	0.84[EUR][1000 genomes]
rs7996908	0.85[EUR][1000 genomes]
rs7999378	0.85[EUR][1000 genomes]
rs7999607	0.85[EUR][1000 genomes]
rs7999790	0.83[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:110879000-110888400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:110879000-110889200	Weak transcription	Fetal Intestine Small	intestine
4	chr13:110879600-110890000	Weak transcription	Fetal Kidney	kidney
5	chr13:110881400-110894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:110881600-110900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:110882400-110900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:110882600-110898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:110882600-110899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:110882800-110900600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:110883200-110895000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:110884200-110902200	Weak transcription	HMEC	breast
15	chr13:110884400-110888800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:110884400-110890200	Weak transcription	Pancreas	Pancrea
17	chr13:110884600-110902400	Weak transcription	NHEK	skin
18	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:110885200-110899000	Weak transcription	Fetal Intestine Large	intestine
20	chr13:110885400-110889000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:110885400-110889000	Weak transcription	Esophagus	oesophagus
22	chr13:110885800-110891000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:110886000-110888800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:110886000-110890000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr13:110886200-110888400	Weak transcription	NH-A	brain
26	chr13:110886400-110888400	Weak transcription	HSMM	muscle
27	chr13:110886400-110888600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:110886400-110888800	Weak transcription	Lung	lung
29	chr13:110886400-110888800	Weak transcription	HSMMtube	muscle
30	chr13:110886400-110889800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:110886400-110890600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr13:110886400-110891200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr13:110886600-110888600	Weak transcription	Fetal Heart	heart
34	chr13:110886600-110888800	Weak transcription	Fetal Stomach	stomach
35	chr13:110886600-110889000	Weak transcription	Fetal Lung	lung
36	chr13:110886600-110889200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:110886600-110889400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr13:110886600-110896000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:110886800-110888400	Weak transcription	Colon Smooth Muscle	Colon
40	chr13:110886800-110888400	Weak transcription	NHLF	lung
41	chr13:110886800-110888400	Weak transcription	Osteobl	bone
42	chr13:110886800-110888800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr13:110886800-110888800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:110886800-110888800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr13:110886800-110888800	Weak transcription	Left Ventricle	heart
46	chr13:110886800-110888800	Weak transcription	Ovary	ovary
47	chr13:110886800-110888800	Weak transcription	Spleen	Spleen
48	chr13:110887000-110888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:110887000-110888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr13:110887000-110888800	Weak transcription	Fetal Muscle Trunk	muscle

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