Variant report

Variant	rs656034
Chromosome Location	chr13:110889842-110889843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11842085	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843610	0.87[EUR][1000 genomes]
rs34808582	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41275104	0.80[EUR][1000 genomes]
rs41275106	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475520	0.88[EUR][1000 genomes]
rs536195	0.88[EUR][1000 genomes]
rs55698841	0.87[EUR][1000 genomes]
rs56066148	0.80[EUR][1000 genomes]
rs56081954	0.80[EUR][1000 genomes]
rs56116457	0.96[EUR][1000 genomes]
rs56152426	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366911	0.80[EUR][1000 genomes]
rs604733	0.87[EUR][1000 genomes]
rs61963293	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963294	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963295	0.88[EUR][1000 genomes]
rs61963301	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963304	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963305	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963306	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963307	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963326	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963327	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492249	0.88[EUR][1000 genomes]
rs6492250	0.88[EUR][1000 genomes]
rs6492251	0.88[EUR][1000 genomes]
rs679248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68079483	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318128	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318692	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319995	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320618	0.87[EUR][1000 genomes]
rs7331362	0.88[EUR][1000 genomes]
rs7332643	0.87[EUR][1000 genomes]
rs7332644	0.87[EUR][1000 genomes]
rs7988985	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989246	0.88[EUR][1000 genomes]
rs7989549	0.88[EUR][1000 genomes]
rs7995509	0.88[EUR][1000 genomes]
rs7995601	0.86[EUR][1000 genomes]
rs7995873	0.86[EUR][1000 genomes]
rs7996908	0.87[EUR][1000 genomes]
rs7999378	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999607	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999790	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583474	0.80[EUR][1000 genomes]
rs9588121	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:110879600-110890000	Weak transcription	Fetal Kidney	kidney
3	chr13:110881400-110894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:110881600-110900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:110882400-110900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:110882600-110898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:110882600-110899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr13:110882800-110900600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:110883200-110895000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:110884200-110902200	Weak transcription	HMEC	breast
13	chr13:110884400-110890200	Weak transcription	Pancreas	Pancrea
14	chr13:110884600-110902400	Weak transcription	NHEK	skin
15	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:110885200-110899000	Weak transcription	Fetal Intestine Large	intestine
17	chr13:110885800-110891000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:110886000-110890000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr13:110886400-110890600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr13:110886400-110891200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:110886600-110896000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:110887800-110890000	Strong transcription	HUVEC	blood vessel
23	chr13:110888400-110892400	Enhancers	Colon Smooth Muscle	Colon
24	chr13:110888400-110896800	Strong transcription	Osteobl	bone
25	chr13:110888600-110890400	Enhancers	Fetal Heart	heart
26	chr13:110888600-110891000	Genic enhancers	NHLF	lung
27	chr13:110888800-110890000	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr13:110888800-110890000	Genic enhancers	Fetal Stomach	stomach
29	chr13:110888800-110890600	Genic enhancers	Adipose Nuclei	Adipose
30	chr13:110888800-110890800	Genic enhancers	Fetal Muscle Leg	muscle
31	chr13:110888800-110890800	Enhancers	Right Atrium	heart
32	chr13:110888800-110890800	Genic enhancers	HSMM	muscle
33	chr13:110888800-110891400	Enhancers	Psoas Muscle	Psoas
34	chr13:110888800-110892000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr13:110888800-110892200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:110888800-110892400	Enhancers	Rectal Smooth Muscle	rectum
37	chr13:110888800-110893000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr13:110888800-110893800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr13:110888800-110894600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr13:110889000-110890000	Enhancers	Aorta	Aorta
41	chr13:110889000-110890200	Genic enhancers	Left Ventricle	heart
42	chr13:110889000-110891000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr13:110889000-110892200	Enhancers	Fetal Lung	lung
44	chr13:110889200-110890600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:110889200-110891800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr13:110889400-110890000	Weak transcription	NH-A	brain
47	chr13:110889400-110890200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr13:110889400-110890200	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr13:110889400-110890200	Enhancers	HSMMtube	muscle
50	chr13:110889400-110891000	Weak transcription	Liver	Liver

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