Variant report

Variant	rs61977409
Chromosome Location	chr14:70507195-70507196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11623433	1.00[AFR][1000 genomes]
rs11625977	1.00[AFR][1000 genomes]
rs17175444	1.00[AFR][1000 genomes]
rs17764944	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17765078	1.00[AFR][1000 genomes]
rs41285486	1.00[AFR][1000 genomes]
rs45542132	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61977403	1.00[AFR][1000 genomes]
rs61977411	1.00[AFR][1000 genomes]
rs61977415	1.00[AFR][1000 genomes]
rs61977419	1.00[AFR][1000 genomes]
rs61977422	1.00[AFR][1000 genomes]
rs61977423	1.00[AFR][1000 genomes]
rs61977424	1.00[AFR][1000 genomes]
rs61977425	1.00[AFR][1000 genomes]
rs61977426	1.00[AFR][1000 genomes]
rs7150941	1.00[AFR][1000 genomes]
rs7161025	1.00[AFR][1000 genomes]
rs8020358	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70497400-70508400	Weak transcription	Fetal Brain Female	brain
2	chr14:70500400-70512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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