Variant report

Variant	rs17175444
Chromosome Location	chr14:70556931-70556932
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70549820..70554172-chr14:70555688..70558705,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11623433	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11625977	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11627233	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11627445	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11629254	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs17107778	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17175297	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs17175346	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17764944	1.00[AFR][1000 genomes]
rs17765078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2125745	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs41285486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs45542132	1.00[AFR][1000 genomes]
rs61977403	1.00[AFR][1000 genomes]
rs61977409	1.00[AFR][1000 genomes]
rs61977411	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61977412	0.88[EUR][1000 genomes]
rs61977413	0.88[EUR][1000 genomes]
rs61977415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977417	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977419	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61977420	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150941	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7161025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8013407	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013867	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020358	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70549600-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70554200-70563000	Weak transcription	Psoas Muscle	Psoas
3	chr14:70554400-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:70554600-70560000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:70556200-70557200	Enhancers	Brain Germinal Matrix	brain
6	chr14:70556200-70557200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:70556200-70557600	Enhancers	Brain Substantia Nigra	brain
8	chr14:70556200-70560000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:70556800-70557200	Enhancers	Brain Angular Gyrus	brain
10	chr14:70556800-70557200	Flanking Active TSS	Brain Cingulate Gyrus	brain
11	chr14:70556800-70557200	Flanking Active TSS	Brain Hippocampus Middle	brain

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