Variant report

Variant	rs11629254
Chromosome Location	chr14:70521425-70521426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70519745..70521992-chr14:70721079..70723653,2	MCF-7	breast:
2	chr14:70506746..70510160-chr14:70520742..70523422,3	K562	blood:
3	chr14:70511625..70515243-chr14:70518617..70521724,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11623433	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs11625977	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs11627233	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627445	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs17107740	1.00[YRI][hapmap]
rs17107778	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17175297	0.92[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175346	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs17175444	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs17765078	0.87[EUR][1000 genomes]
rs184477	0.86[CEU][hapmap]
rs2125745	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41285486	0.87[EUR][1000 genomes]
rs61977411	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61977412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977415	0.87[EUR][1000 genomes]
rs61977417	0.88[EUR][1000 genomes]
rs61977419	0.83[EUR][1000 genomes]
rs61977420	0.87[EUR][1000 genomes]
rs61977422	0.87[EUR][1000 genomes]
rs61977423	0.88[EUR][1000 genomes]
rs61977424	0.88[EUR][1000 genomes]
rs61977425	0.88[EUR][1000 genomes]
rs61977426	0.88[EUR][1000 genomes]
rs7150941	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7161025	0.87[EUR][1000 genomes]
rs8013407	0.88[EUR][1000 genomes]
rs8013867	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs8020358	0.93[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70512800-70535600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70514600-70531200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:70517000-70525200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:70517800-70526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:70518000-70526200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:70518200-70524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70519000-70525400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:70521400-70525600	Weak transcription	H9 Cell Line	embryonic stem cell

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