Variant report

Variant	rs17765078
Chromosome Location	chr14:70549911-70549912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70549820..70554172-chr14:70555688..70558705,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11623433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11625977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11626232	1.00[MEX][hapmap]
rs11627233	1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs11627445	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11629254	0.87[EUR][1000 genomes]
rs17107778	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17175346	1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17175444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17764944	1.00[AFR][1000 genomes]
rs2125745	0.82[EUR][1000 genomes]
rs41285486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45542132	1.00[AFR][1000 genomes]
rs61977403	1.00[AFR][1000 genomes]
rs61977409	1.00[AFR][1000 genomes]
rs61977411	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61977412	0.87[EUR][1000 genomes]
rs61977413	0.87[EUR][1000 genomes]
rs61977415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977417	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977419	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977420	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7150941	1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013407	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8013867	1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8020358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70536800-70552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:70539000-70552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:70549600-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:70549800-70554000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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