Variant report

Variant	rs17107778
Chromosome Location	chr14:70567338-70567339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70564827..70567373-chr14:70568673..70570974,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11623433	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11625977	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11627233	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11627445	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11629254	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17175297	0.92[CEU][hapmap]
rs17175346	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17175444	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765078	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2125745	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs41285486	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60473147	0.93[AFR][1000 genomes]
rs61977411	0.84[EUR][1000 genomes]
rs61977412	0.87[EUR][1000 genomes]
rs61977413	0.87[EUR][1000 genomes]
rs61977415	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61977417	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977419	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977420	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61977422	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61977423	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977424	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977425	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977426	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7146765	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs7150941	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7161025	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74061051	0.93[AFR][1000 genomes]
rs8013407	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8013867	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8020358	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70560000-70567600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr14:70560000-70567800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:70563400-70567400	Enhancers	HSMMtube	muscle
4	chr14:70565800-70578400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:70565800-70578800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:70566000-70567800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:70566000-70578600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:70566400-70568600	Enhancers	Psoas Muscle	Psoas

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