Variant report

Variant	rs61977411
Chromosome Location	chr14:70515779-70515780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70514161..70515859-chr14:70723794..70725987,2	MCF-7	breast:
2	chr14:70514582..70517348-chr14:70824742..70826514,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133983	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11623433	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11625977	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11627233	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11627445	0.85[EUR][1000 genomes]
rs11629254	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17107778	0.84[EUR][1000 genomes]
rs17175297	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17175346	0.85[EUR][1000 genomes]
rs17175444	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17764944	1.00[AFR][1000 genomes]
rs17765078	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs184477	0.81[EUR][1000 genomes]
rs2125745	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41285486	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs45542132	1.00[AFR][1000 genomes]
rs61977403	1.00[AFR][1000 genomes]
rs61977409	1.00[AFR][1000 genomes]
rs61977412	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61977413	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61977415	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61977417	0.85[EUR][1000 genomes]
rs61977419	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61977420	0.84[EUR][1000 genomes]
rs61977422	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61977423	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61977424	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61977425	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61977426	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7150941	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7161025	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8013407	0.85[EUR][1000 genomes]
rs8013867	0.85[EUR][1000 genomes]
rs8020358	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70511200-70518200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70511600-70519000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70512600-70516600	Weak transcription	HSMMtube	muscle
4	chr14:70512800-70535600	Weak transcription	Psoas Muscle	Psoas
5	chr14:70513200-70519200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:70513200-70520000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:70514200-70518000	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:70514600-70516000	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:70514600-70531200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:70514800-70517800	Enhancers	HepG2	liver
11	chr14:70515200-70516400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:70515400-70515800	Strong transcription	Fetal Brain Female	brain
13	chr14:70515400-70515800	Enhancers	Pancreas	Pancrea
14	chr14:70515400-70515800	Enhancers	A549	lung
15	chr14:70515400-70516000	Enhancers	Gastric	stomach

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