Variant report

Variant	rs11627445
Chromosome Location	chr14:70562254-70562255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11623433	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11625977	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11627233	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11629254	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs17107773	0.82[YRI][hapmap]
rs17107778	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17175297	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs17175346	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17175444	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17765078	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2125745	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs41285486	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977411	0.85[EUR][1000 genomes]
rs61977412	0.88[EUR][1000 genomes]
rs61977413	0.88[EUR][1000 genomes]
rs61977415	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977419	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61977420	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977422	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977423	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977424	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977425	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977426	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150941	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7161025	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8013407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013867	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020358	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70549600-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70554200-70563000	Weak transcription	Psoas Muscle	Psoas
3	chr14:70554400-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:70557200-70565200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:70560000-70567600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr14:70560000-70567800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:70560400-70564400	Weak transcription	Right Atrium	heart
8	chr14:70561800-70563200	Weak transcription	Brain Angular Gyrus	brain
9	chr14:70561800-70565000	Weak transcription	HepG2	liver
10	chr14:70562000-70563200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:70562000-70563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:70562200-70562400	Weak transcription	HSMMtube	muscle
13	chr14:70562200-70563600	Weak transcription	Fetal Brain Male	brain
14	chr14:70562200-70563800	Weak transcription	Fetal Brain Female	brain
15	chr14:70562200-70564400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:70562200-70564800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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