Variant report

Variant	rs62010360
Chromosome Location	chr15:78617547-78617548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78603756..78606983-chr15:78614948..78617752,3	K562	blood:
2	chr15:78617234..78619818-chr15:78622229..78624216,2	MCF-7	breast:
3	chr15:78607811..78611312-chr15:78615142..78617674,3	K562	blood:
4	chr15:78615567..78617904-chr15:78638548..78641463,2	K562	blood:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11630206	0.95[ASN][1000 genomes]
rs62007859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037145	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78610000-78617600	Weak transcription	Fetal Intestine Large	intestine
2	chr15:78610600-78618200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:78611000-78618200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:78612800-78618600	Enhancers	Fetal Stomach	stomach
5	chr15:78613400-78618200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78614600-78617600	Weak transcription	Right Ventricle	heart
7	chr15:78614800-78621800	Weak transcription	Spleen	Spleen
8	chr15:78615200-78617600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:78615200-78617600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:78615400-78617600	Weak transcription	Placenta	Placenta
11	chr15:78616000-78621400	Weak transcription	HUVEC	blood vessel
12	chr15:78616200-78619800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:78616200-78619800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:78616600-78617600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:78616600-78618000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:78616800-78617600	Enhancers	Lung	lung
17	chr15:78616800-78618000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:78616800-78618000	Enhancers	Stomach Smooth Muscle	stomach
19	chr15:78617000-78617600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:78617000-78618000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:78617000-78618000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:78617000-78618200	Enhancers	Fetal Heart	heart
23	chr15:78617000-78618600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:78617200-78617600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:78617200-78617800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:78617200-78617800	Enhancers	NH-A	brain
27	chr15:78617200-78618200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:78617200-78618600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:78617200-78618600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:78617200-78618800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:78617400-78617600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr15:78617400-78618000	Enhancers	Esophagus	oesophagus
33	chr15:78617400-78618200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr15:78617400-78618200	Enhancers	Fetal Intestine Small	intestine
35	chr15:78617400-78618200	Enhancers	HMEC	breast
36	chr15:78617400-78623600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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