Variant report

Variant	rs62023342
Chromosome Location	chr15:72161305-72161306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10518979	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1074330	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072338	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072339	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072346	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11852789	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11853268	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12050895	0.87[EUR][1000 genomes]
rs12439900	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12591426	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12592364	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12593134	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12593908	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12595228	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12595464	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12899485	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12901580	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12901886	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12902006	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12903484	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12903980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906711	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12908300	0.88[EUR][1000 genomes]
rs12911154	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12913042	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12914070	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12916694	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12916951	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12917428	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1384007	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1481860	0.81[EUR][1000 genomes]
rs1481861	0.81[EUR][1000 genomes]
rs16956241	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16956273	0.80[AMR][1000 genomes]
rs16956302	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16956328	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16956381	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16956444	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16956452	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2035379	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2054601	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2200056	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2246225	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2279283	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2291278	0.86[ASN][1000 genomes]
rs2306488	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306490	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415130	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2625530	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2723342	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2723343	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2723356	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2742323	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899773	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929528	0.80[EUR][1000 genomes]
rs2957725	0.81[EUR][1000 genomes]
rs2957737	0.81[EUR][1000 genomes]
rs34085279	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34137768	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34189331	0.81[EUR][1000 genomes]
rs34514871	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35021156	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35115747	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35167572	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35186252	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35258998	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35673773	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4131630	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4238447	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4445848	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4776579	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4776581	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4776584	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4777464	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4777467	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4777469	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4777471	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4777474	0.89[ASN][1000 genomes]
rs4777477	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777478	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777480	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4777484	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62025574	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71395051	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7170461	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7170754	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172309	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7177242	0.83[EUR][1000 genomes]
rs7183748	0.84[EUR][1000 genomes]
rs7183749	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7403191	0.84[EUR][1000 genomes]
rs8025504	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8028532	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8032038	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8747	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9120	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs972028	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs972029	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62023342	MYO9A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72119200-72171800	Weak transcription	Psoas Muscle	Psoas
3	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
4	chr15:72122400-72195000	Weak transcription	NHEK	skin
5	chr15:72122600-72171800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:72122600-72185200	Weak transcription	Esophagus	oesophagus
7	chr15:72122600-72195800	Weak transcription	Gastric	stomach
8	chr15:72131800-72192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:72138200-72172400	Weak transcription	HUVEC	blood vessel
10	chr15:72140200-72171800	Weak transcription	HMEC	breast
11	chr15:72141400-72174200	Weak transcription	Fetal Brain Male	brain
12	chr15:72142600-72166400	Weak transcription	GM12878-XiMat	blood
13	chr15:72142600-72170200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:72142600-72171800	Weak transcription	NH-A	brain
15	chr15:72142600-72183400	Weak transcription	Brain Angular Gyrus	brain
16	chr15:72142600-72189600	Weak transcription	NHLF	lung
17	chr15:72142600-72199200	Weak transcription	Hela-S3	cervix
18	chr15:72142800-72170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:72142800-72171800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:72142800-72172000	Weak transcription	Dnd41	blood
21	chr15:72142800-72176000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:72142800-72184800	Weak transcription	A549	lung
23	chr15:72142800-72190200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:72143000-72163400	Weak transcription	Fetal Intestine Small	intestine
25	chr15:72143000-72172200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:72143000-72190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:72143000-72190600	Weak transcription	Colonic Mucosa	Colon
28	chr15:72143800-72172000	Weak transcription	Brain Germinal Matrix	brain
29	chr15:72144000-72166400	Weak transcription	Ovary	ovary
30	chr15:72144200-72170400	Weak transcription	NHDF-Ad	bronchial
31	chr15:72144600-72170200	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:72145200-72170000	Weak transcription	Fetal Brain Female	brain
34	chr15:72145400-72163400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:72145400-72163400	Weak transcription	Fetal Stomach	stomach
36	chr15:72145400-72190600	Weak transcription	Spleen	Spleen
37	chr15:72145600-72170600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr15:72145600-72182800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:72145600-72184800	Weak transcription	Lung	lung
40	chr15:72145800-72170400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:72146000-72170000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:72146200-72171800	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:72146200-72171800	Weak transcription	Left Ventricle	heart
44	chr15:72146200-72172000	Weak transcription	Brain Anterior Caudate	brain
45	chr15:72146400-72169000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:72146400-72169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:72146400-72170400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:72146400-72171400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:72146400-72171800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:72146400-72171800	Weak transcription	Fetal Intestine Large	intestine

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