Variant report

Variant	rs10518979
Chromosome Location	chr15:72268986-72268987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72262124..72264073-chr15:72266768..72269290,2	K562	blood:

Extended variants
information (count: 158 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs1037680	0.80[ASN][1000 genomes]
rs1074330	0.91[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072338	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072339	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072346	0.82[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11852789	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853268	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12050895	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12439494	0.83[CEU][hapmap]
rs12439900	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591426	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592044	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12593134	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12593908	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12595228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12595464	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12899485	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12901580	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12901886	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12902006	0.91[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902661	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12903484	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12903980	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906711	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12908300	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12908882	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12911154	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12913042	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12914070	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12916694	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12916951	0.82[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12917428	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384007	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1481860	0.86[EUR][1000 genomes]
rs1481861	0.85[EUR][1000 genomes]
rs16953769	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16956241	0.83[EUR][1000 genomes]
rs16956302	0.87[EUR][1000 genomes]
rs16956328	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16956381	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956444	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16956452	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2035379	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2054601	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2200056	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246225	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap]
rs2279283	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291278	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2306488	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306490	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2306576	0.82[TSI][hapmap]
rs2415128	0.85[TSI][hapmap]
rs2415130	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2607090	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2625529	0.85[GIH][hapmap]
rs2625530	0.87[EUR][1000 genomes]
rs2723343	0.80[CEU][hapmap];0.95[CHB][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap]
rs2742323	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2856929	0.81[ASN][1000 genomes]
rs2899773	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2929518	0.82[TSI][hapmap]
rs2929528	0.85[EUR][1000 genomes]
rs2957368	0.84[EUR][1000 genomes]
rs2957373	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs2957725	0.83[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs2957734	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs2957735	0.82[TSI][hapmap]
rs2957737	0.83[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs34085279	0.89[ASN][1000 genomes]
rs34137768	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34189331	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34487006	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34514871	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35021156	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35112434	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35115747	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35167572	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35186252	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35258998	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35673773	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35713471	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743224	0.94[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3759900	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs3784309	0.80[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap]
rs3803471	0.80[ASN][1000 genomes]
rs4131630	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4238447	0.87[EUR][1000 genomes]
rs4238449	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4411469	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4445848	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4776579	0.87[EUR][1000 genomes]
rs4776581	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4776584	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4776586	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4777464	0.87[EUR][1000 genomes]
rs4777467	0.84[EUR][1000 genomes]
rs4777469	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4777471	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777474	0.93[ASN][1000 genomes]
rs4777477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777480	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777484	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4777485	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4777489	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55854204	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60921026	0.85[ASN][1000 genomes]
rs62023342	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62025574	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6494973	0.80[TSI][hapmap]
rs6494975	0.83[CEU][hapmap]
rs6494990	0.80[EUR][1000 genomes]
rs6494992	0.83[CEU][hapmap]
rs71395051	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170461	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7170754	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172309	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177242	0.83[CEU][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs7182776	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[ASN][1000 genomes]
rs7183748	0.81[EUR][1000 genomes]
rs7183749	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7403191	0.81[EUR][1000 genomes]
rs7497104	0.82[TSI][hapmap]
rs8023703	0.80[ASN][1000 genomes]
rs8025504	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8028115	0.82[TSI][hapmap]
rs8028532	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030815	0.82[TSI][hapmap]
rs8032038	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8182011	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8192364	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8192386	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8192431	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8747	0.80[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];0.90[MKK][hapmap]
rs9120	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs972028	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs972029	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs982752	0.83[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv457197	chr15:72203517-72296328	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv569910	chr15:72203517-72296328	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv569911	chr15:72203517-72305982	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv457199	chr15:72261385-72302667	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv569913	chr15:72261385-72302667	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv457200	chr15:72261385-72325595	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv569914	chr15:72261385-72325595	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
18	nsv569915	chr15:72267164-72307691	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv569916	chr15:72268986-72325595	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10518979	MYO9A	Cis_1M	lymphoblastoid	RTeQTL
rs10518979	PARP6	cis	parietal	SCAN
rs10518979	TIPIN	cis	parietal	SCAN
rs10518979	SENP8	cis	cerebellum	SCAN

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72225000-72281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:72225000-72282000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:72225000-72305200	Weak transcription	Psoas Muscle	Psoas
4	chr15:72225000-72305600	Weak transcription	Gastric	stomach
5	chr15:72225800-72270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:72226600-72281800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:72226800-72271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:72227600-72281600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:72227600-72281800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:72227800-72281600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:72227800-72326200	Weak transcription	Fetal Brain Male	brain
13	chr15:72228800-72279600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:72228800-72281600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:72230600-72291000	Weak transcription	Primary B cells from cord blood	blood
16	chr15:72240200-72282200	Weak transcription	Aorta	Aorta
17	chr15:72244200-72269400	Weak transcription	HSMM	muscle
18	chr15:72244200-72281800	Weak transcription	Brain Germinal Matrix	brain
19	chr15:72244400-72269400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:72244400-72298600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:72244600-72269400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:72244800-72281600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:72246600-72293600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:72247800-72281600	Weak transcription	Liver	Liver
25	chr15:72250200-72281600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:72250200-72291200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:72253000-72281600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:72255200-72284000	Weak transcription	Stomach Mucosa	stomach
29	chr15:72255400-72281600	Weak transcription	A549	lung
30	chr15:72257200-72282200	Weak transcription	Thymus	Thymus
31	chr15:72257400-72281600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:72257600-72281600	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:72259800-72281600	Weak transcription	Brain Substantia Nigra	brain
34	chr15:72260000-72281800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:72260400-72269600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:72260400-72274600	Weak transcription	HUVEC	blood vessel
37	chr15:72260400-72281600	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:72260400-72291200	Weak transcription	Brain Anterior Caudate	brain
39	chr15:72260400-72301000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:72261000-72326200	Weak transcription	NH-A	brain
41	chr15:72262000-72269600	Weak transcription	Ovary	ovary
42	chr15:72262400-72293000	Weak transcription	Small Intestine	intestine
43	chr15:72262600-72291000	Weak transcription	NHDF-Ad	bronchial
44	chr15:72262800-72281600	Weak transcription	Osteobl	bone
45	chr15:72263400-72281600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:72263400-72281800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:72263600-72300400	Weak transcription	NHLF	lung
48	chr15:72264000-72281600	Weak transcription	Fetal Brain Female	brain
49	chr15:72264000-72301800	Weak transcription	Colonic Mucosa	Colon
50	chr15:72264200-72270400	Strong transcription	Fetal Muscle Trunk	muscle

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