Variant report

Variant	rs7170461
Chromosome Location	chr15:72218599-72218600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10518979	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1074330	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072338	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072339	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072346	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11852789	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11853268	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12050895	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12439900	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12591426	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12592044	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12592364	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12593134	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12593908	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595228	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12595464	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12899485	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12901580	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12901886	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12902006	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12903484	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12903980	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12906711	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908300	0.93[EUR][1000 genomes]
rs12908882	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12911154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913042	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12914070	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12916694	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12916951	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12917428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1384007	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481860	0.85[EUR][1000 genomes]
rs1481861	0.86[EUR][1000 genomes]
rs16953769	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16956241	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16956302	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16956328	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16956381	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956444	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16956452	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2035379	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2054601	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2200056	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246225	0.82[ASN][1000 genomes]
rs2279283	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306488	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306490	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415130	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2625530	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2723356	0.86[AMR][1000 genomes]
rs2742323	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2899773	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2929528	0.84[EUR][1000 genomes]
rs2957368	0.83[EUR][1000 genomes]
rs2957373	0.82[EUR][1000 genomes]
rs2957725	0.85[EUR][1000 genomes]
rs2957737	0.85[EUR][1000 genomes]
rs34085279	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34137768	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34189331	0.86[EUR][1000 genomes]
rs34487006	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34514871	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35021156	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35112434	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35115747	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35167572	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35186252	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35258998	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35673773	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35713471	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3743224	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4131630	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4238447	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4238449	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4411469	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4445848	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4776579	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4776581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776584	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4776586	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4777464	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4777467	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4777469	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4777471	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777474	0.99[ASN][1000 genomes]
rs4777477	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777478	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777480	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4777484	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4777485	0.81[EUR][1000 genomes]
rs4777489	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55854204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60921026	0.80[ASN][1000 genomes]
rs62023342	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62025574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71395051	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7170754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172309	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7177242	0.82[EUR][1000 genomes]
rs7183748	0.81[EUR][1000 genomes]
rs7183749	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7403191	0.81[EUR][1000 genomes]
rs8025504	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8028532	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8032038	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8182011	0.81[EUR][1000 genomes]
rs8747	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9120	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs972028	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs972029	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv457197	chr15:72203517-72296328	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv569910	chr15:72203517-72296328	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv569911	chr15:72203517-72305982	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7170461	MYO9A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:72191000-72222800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:72191200-72229600	Weak transcription	HUVEC	blood vessel
4	chr15:72192400-72218600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:72192400-72218800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:72192400-72222800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:72192400-72223400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:72192400-72223400	Weak transcription	NH-A	brain
9	chr15:72192400-72223600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:72192400-72224000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:72192400-72241200	Weak transcription	Brain Angular Gyrus	brain
12	chr15:72192400-72249400	Weak transcription	NHLF	lung
13	chr15:72193800-72224600	Weak transcription	Thymus	Thymus
14	chr15:72193800-72232000	Weak transcription	Fetal Heart	heart
15	chr15:72194200-72218600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:72194200-72223400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:72194200-72223400	Weak transcription	HSMMtube	muscle
18	chr15:72194200-72224400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:72194600-72223000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:72195400-72222800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:72196200-72222200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:72196600-72223000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:72196800-72221400	Weak transcription	Brain Germinal Matrix	brain
24	chr15:72197400-72222200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:72197400-72223600	Weak transcription	Osteobl	bone
26	chr15:72202000-72221400	Weak transcription	Fetal Brain Male	brain
27	chr15:72204200-72221800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:72206400-72222800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:72206600-72221600	Weak transcription	Liver	Liver
30	chr15:72206600-72221800	Weak transcription	Fetal Kidney	kidney
31	chr15:72206600-72222000	Weak transcription	Primary B cells from cord blood	blood
32	chr15:72206600-72222000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:72206600-72222200	Weak transcription	A549	lung
34	chr15:72206600-72223000	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:72206600-72223000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:72206800-72222800	Weak transcription	Fetal Brain Female	brain
37	chr15:72206800-72224600	Weak transcription	Brain Anterior Caudate	brain
38	chr15:72207000-72221800	Weak transcription	HSMM	muscle
39	chr15:72207000-72224200	Weak transcription	Ovary	ovary
40	chr15:72207400-72221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:72207400-72221800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:72207400-72224000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:72209200-72222000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:72209400-72221400	Weak transcription	Primary T cells from cord blood	blood
45	chr15:72209400-72222400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:72209400-72222600	Weak transcription	NHDF-Ad	bronchial
47	chr15:72209600-72218600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:72209600-72219200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:72209600-72222600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:72210400-72223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links