Variant report

Variant	rs62072466
Chromosome Location	chr17:18115544-18115545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:18111005..18113844-chr17:18114465..18116043,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10048161	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451244	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078411	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078412	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652964	0.86[EUR][1000 genomes]
rs11653988	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654146	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654177	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654741	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655588	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655731	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11655797	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656035	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11657194	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11658477	0.86[EUR][1000 genomes]
rs11868832	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11868886	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11871039	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11871491	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12600694	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13284	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563371	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16960980	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960983	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960986	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960990	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960996	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015336	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28811342	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088233	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474249	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36058389	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55918833	0.86[EUR][1000 genomes]
rs58441148	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59354912	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60285171	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072464	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62072465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072467	0.94[EUR][1000 genomes]
rs62072468	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072496	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62072497	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62072498	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072500	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073602	0.85[EUR][1000 genomes]
rs62073603	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62073604	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62073605	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62073606	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62073607	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073608	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073609	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073611	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62073615	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62073649	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073650	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502640	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207276	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs735960	0.86[EUR][1000 genomes]
rs8065026	0.84[EUR][1000 genomes]
rs8069094	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077577	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9916193	0.84[EUR][1000 genomes]
rs997315	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv482491	chr17:17959577-18153920	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1061162	chr17:17978838-18259234	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv492305	chr17:17980441-18424702	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
7	nsv510702	chr17:18037676-18116801	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1062828	chr17:18098110-18136330	Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	nsv543245	chr17:18098110-18136330	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv907773	chr17:18099962-18206234	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv907774	chr17:18103907-18206234	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv907775	chr17:18108496-18206234	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:18095400-18116000	Strong transcription	Fetal Stomach	stomach
2	chr17:18102000-18116200	Strong transcription	Fetal Muscle Trunk	muscle
3	chr17:18104800-18116400	Weak transcription	Psoas Muscle	Psoas
4	chr17:18109000-18115800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:18109400-18116600	Weak transcription	Fetal Kidney	kidney
6	chr17:18109400-18117000	Weak transcription	Fetal Brain Male	brain
7	chr17:18109400-18122200	Weak transcription	K562	blood
8	chr17:18109600-18117600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr17:18110400-18115800	Strong transcription	Pancreas	Pancrea
10	chr17:18110600-18122200	Weak transcription	NHDF-Ad	bronchial
11	chr17:18112600-18127400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr17:18113000-18128200	Weak transcription	Small Intestine	intestine
13	chr17:18113200-18116800	Weak transcription	HepG2	liver
14	chr17:18113200-18128200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:18113600-18121200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr17:18113600-18128000	Weak transcription	Colon Smooth Muscle	Colon
17	chr17:18113800-18116400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr17:18113800-18116800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr17:18113800-18122000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr17:18113800-18124400	Weak transcription	Hela-S3	cervix
21	chr17:18113800-18124600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:18113800-18127400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr17:18113800-18127400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:18113800-18128200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:18114000-18120800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:18114000-18121000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr17:18114200-18117000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr17:18114200-18117600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr17:18114200-18118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr17:18114200-18122000	Weak transcription	NH-A	brain
31	chr17:18114200-18122200	Weak transcription	Fetal Lung	lung
32	chr17:18114200-18122200	Weak transcription	HUVEC	blood vessel
33	chr17:18114200-18127400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr17:18114200-18127400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr17:18114200-18127400	Weak transcription	Left Ventricle	heart
36	chr17:18114400-18117000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:18114400-18117600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr17:18114400-18117600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr17:18114400-18117600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr17:18114400-18117600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr17:18114400-18117600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr17:18114400-18117800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:18114400-18118200	Weak transcription	Primary T cells from cord blood	blood
44	chr17:18114400-18118200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr17:18114400-18120800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr17:18114400-18120800	Weak transcription	Brain Substantia Nigra	brain
47	chr17:18114400-18122200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr17:18114400-18127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr17:18114400-18128200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr17:18114600-18115800	Weak transcription	Brain Inferior Temporal Lobe	brain

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