Variant report

Variant	rs62072467
Chromosome Location	chr17:18116455-18116456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10048161	0.92[EUR][1000 genomes]
rs10451244	0.95[EUR][1000 genomes]
rs11078411	0.90[EUR][1000 genomes]
rs11078412	0.91[EUR][1000 genomes]
rs11652964	0.88[EUR][1000 genomes]
rs11653988	0.90[EUR][1000 genomes]
rs11654146	0.92[EUR][1000 genomes]
rs11654177	0.94[EUR][1000 genomes]
rs11654741	0.95[EUR][1000 genomes]
rs11655588	0.95[EUR][1000 genomes]
rs11655731	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655797	0.95[EUR][1000 genomes]
rs11656035	0.92[EUR][1000 genomes]
rs11657194	0.89[EUR][1000 genomes]
rs11658477	0.89[EUR][1000 genomes]
rs11868832	0.91[EUR][1000 genomes]
rs11868886	0.96[EUR][1000 genomes]
rs11869582	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11871039	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871491	0.95[EUR][1000 genomes]
rs12600694	0.83[EUR][1000 genomes]
rs13284	0.95[EUR][1000 genomes]
rs1563371	0.95[EUR][1000 genomes]
rs1563373	0.95[EUR][1000 genomes]
rs16960980	0.92[EUR][1000 genomes]
rs16960983	0.92[EUR][1000 genomes]
rs16960986	0.94[EUR][1000 genomes]
rs16960990	0.94[EUR][1000 genomes]
rs16960996	0.95[EUR][1000 genomes]
rs2015336	0.92[EUR][1000 genomes]
rs28811342	0.94[EUR][1000 genomes]
rs3088233	0.95[EUR][1000 genomes]
rs34474249	0.92[EUR][1000 genomes]
rs36058389	0.94[EUR][1000 genomes]
rs55918833	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58441148	0.95[EUR][1000 genomes]
rs59354912	0.87[EUR][1000 genomes]
rs60285171	0.93[EUR][1000 genomes]
rs62072464	0.93[EUR][1000 genomes]
rs62072465	0.95[EUR][1000 genomes]
rs62072466	0.94[EUR][1000 genomes]
rs62072468	0.93[EUR][1000 genomes]
rs62072496	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072497	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072498	0.95[EUR][1000 genomes]
rs62072500	0.95[EUR][1000 genomes]
rs62072546	0.82[AMR][1000 genomes]
rs62073602	0.87[EUR][1000 genomes]
rs62073603	0.89[EUR][1000 genomes]
rs62073604	0.90[EUR][1000 genomes]
rs62073605	0.91[EUR][1000 genomes]
rs62073606	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073607	0.84[EUR][1000 genomes]
rs62073608	0.90[EUR][1000 genomes]
rs62073609	0.89[EUR][1000 genomes]
rs62073611	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073615	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62073649	0.92[EUR][1000 genomes]
rs62073650	0.91[EUR][1000 genomes]
rs6502640	0.95[EUR][1000 genomes]
rs7207276	0.89[EUR][1000 genomes]
rs735960	0.89[EUR][1000 genomes]
rs8065026	0.86[EUR][1000 genomes]
rs8069094	0.89[EUR][1000 genomes]
rs8077577	0.89[EUR][1000 genomes]
rs9916193	0.83[EUR][1000 genomes]
rs997315	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv482491	chr17:17959577-18153920	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1061162	chr17:17978838-18259234	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv492305	chr17:17980441-18424702	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
7	nsv510702	chr17:18037676-18116801	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1062828	chr17:18098110-18136330	Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	nsv543245	chr17:18098110-18136330	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv907773	chr17:18099962-18206234	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv907774	chr17:18103907-18206234	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv907775	chr17:18108496-18206234	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:18109400-18116600	Weak transcription	Fetal Kidney	kidney
2	chr17:18109400-18117000	Weak transcription	Fetal Brain Male	brain
3	chr17:18109400-18122200	Weak transcription	K562	blood
4	chr17:18109600-18117600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr17:18110600-18122200	Weak transcription	NHDF-Ad	bronchial
6	chr17:18112600-18127400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr17:18113000-18128200	Weak transcription	Small Intestine	intestine
8	chr17:18113200-18116800	Weak transcription	HepG2	liver
9	chr17:18113200-18128200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr17:18113600-18121200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:18113600-18128000	Weak transcription	Colon Smooth Muscle	Colon
12	chr17:18113800-18116800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr17:18113800-18122000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr17:18113800-18124400	Weak transcription	Hela-S3	cervix
15	chr17:18113800-18124600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:18113800-18127400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr17:18113800-18127400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr17:18113800-18128200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:18114000-18120800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:18114000-18121000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr17:18114200-18117000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr17:18114200-18117600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr17:18114200-18118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr17:18114200-18122000	Weak transcription	NH-A	brain
25	chr17:18114200-18122200	Weak transcription	Fetal Lung	lung
26	chr17:18114200-18122200	Weak transcription	HUVEC	blood vessel
27	chr17:18114200-18127400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr17:18114200-18127400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr17:18114200-18127400	Weak transcription	Left Ventricle	heart
30	chr17:18114400-18117000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr17:18114400-18117600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr17:18114400-18117600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr17:18114400-18117600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr17:18114400-18117600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr17:18114400-18117600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr17:18114400-18117800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr17:18114400-18118200	Weak transcription	Primary T cells from cord blood	blood
38	chr17:18114400-18118200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr17:18114400-18120800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr17:18114400-18120800	Weak transcription	Brain Substantia Nigra	brain
41	chr17:18114400-18122200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr17:18114400-18127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr17:18114400-18128200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr17:18114600-18117000	Weak transcription	Aorta	Aorta
45	chr17:18114600-18117200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr17:18114600-18117200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr17:18114600-18118000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr17:18114600-18118000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr17:18114600-18118000	Weak transcription	NHEK	skin
50	chr17:18114600-18118200	Weak transcription	Primary monocytes fromperipheralblood	blood

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