The 2.0 version of rSNPBase

Variant report

Variant rs62120860
Chromosome Location chr19:53185614-53185615
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53155000-53191400 Weak transcription Colon Smooth Muscle Colon
2 chr19:53157200-53191600 Weak transcription Rectal Smooth Muscle rectum
3 chr19:53162800-53186600 Weak transcription Aorta Aorta
4 chr19:53163000-53192400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr19:53163800-53188400 Weak transcription Ovary ovary
6 chr19:53164000-53192400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr19:53164000-53192400 Weak transcription NH-A brain
8 chr19:53164000-53193000 Weak transcription Right Ventricle heart
9 chr19:53164200-53192400 Weak transcription Brain Angular Gyrus brain
10 chr19:53164400-53192400 Weak transcription HSMM muscle
11 chr19:53164600-53189200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr19:53164600-53192200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr19:53164800-53186400 Weak transcription Osteobl bone
14 chr19:53165000-53191600 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr19:53165000-53191800 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr19:53165000-53192400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr19:53165200-53186400 Weak transcription Fetal Thymus thymus
18 chr19:53165200-53186400 Weak transcription NHLF lung
19 chr19:53165600-53191800 Weak transcription NHDF-Ad bronchial
20 chr19:53165800-53186400 Weak transcription Pancreas Pancrea
21 chr19:53165800-53191600 Weak transcription Fetal Brain Female brain
22 chr19:53168600-53192000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr19:53168800-53193000 Weak transcription HSMMtube muscle
24 chr19:53169000-53192200 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr19:53169200-53193000 Weak transcription Gastric stomach
26 chr19:53173200-53186000 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr19:53174600-53189800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr19:53174600-53191400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr19:53176800-53191800 Weak transcription Fetal Lung lung
30 chr19:53177600-53191400 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr19:53177600-53191400 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr19:53177600-53192000 Weak transcription HMEC breast
33 chr19:53177800-53191800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr19:53177800-53193000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr19:53178000-53188400 Weak transcription Placenta Amnion Placenta Amnion
36 chr19:53178200-53189800 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr19:53178400-53186400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr19:53179000-53186400 Weak transcription NHEK skin
39 chr19:53179000-53186600 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr19:53179200-53191600 Weak transcription Primary hematopoietic stem cells blood
41 chr19:53179400-53186000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr19:53179400-53186000 Weak transcription Esophagus oesophagus
43 chr19:53179400-53186800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr19:53179400-53186800 Weak transcription Spleen Spleen
45 chr19:53179400-53189800 Weak transcription Primary T helper naive cells fromperipheralblood blood
46 chr19:53179400-53193000 Weak transcription H9 Cell Line embryonic stem cell
47 chr19:53179400-53193000 Weak transcription Left Ventricle heart
48 chr19:53179800-53193000 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr19:53180400-53186600 Weak transcription Primary neutrophils fromperipheralblood blood
50 chr19:53180400-53188800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015