Variant report

Variant	rs62137457
Chromosome Location	chr2:63945249-63945250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56342040	0.90[AMR][1000 genomes]
rs57120200	0.90[AMR][1000 genomes]
rs57844293	0.81[AMR][1000 genomes]
rs57877849	0.90[AMR][1000 genomes]
rs58208651	0.81[AMR][1000 genomes]
rs58472560	0.81[AMR][1000 genomes]
rs58495096	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62136364	0.89[AMR][1000 genomes]
rs62136366	0.89[AMR][1000 genomes]
rs62136367	0.89[AMR][1000 genomes]
rs62138760	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62138819	0.90[AMR][1000 genomes]
rs62138820	0.90[AMR][1000 genomes]
rs62138823	0.90[AMR][1000 genomes]
rs6745518	0.90[AMR][1000 genomes]
rs6751397	0.81[AMR][1000 genomes]
rs73937268	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7582457	0.81[AMR][1000 genomes]
rs7606341	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63938400-63946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:63940600-63946200	Weak transcription	Psoas Muscle	Psoas
4	chr2:63940600-63950600	Weak transcription	Adipose Nuclei	Adipose
5	chr2:63941200-63946200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:63941200-63946200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:63943600-63947600	Weak transcription	Liver	Liver
9	chr2:63944400-63945800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:63944600-63948400	Weak transcription	Pancreas	Pancrea
11	chr2:63945000-63946200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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