Variant report

Variant	rs7606341
Chromosome Location	chr2:64048982-64048983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64048368..64050070-chr2:64065830..64068602,2	K562	blood:
2	chr2:64046636..64049147-chr2:64067078..64069999,4	MCF-7	breast:
3	chr2:64047547..64049130-chr2:64067099..64068601,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13431437	1.00[CHB][hapmap]
rs17028099	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17554748	1.00[CHB][hapmap]
rs3924029	0.81[EUR][1000 genomes]
rs56342040	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57120200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57844293	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57877849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58208651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58472560	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58495096	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59540641	0.81[EUR][1000 genomes]
rs62136361	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62136362	0.95[EUR][1000 genomes]
rs62136364	0.95[EUR][1000 genomes]
rs62136366	0.95[EUR][1000 genomes]
rs62136367	0.95[EUR][1000 genomes]
rs62136369	0.81[EUR][1000 genomes]
rs62136391	0.85[EUR][1000 genomes]
rs62136393	0.81[EUR][1000 genomes]
rs62136397	0.81[EUR][1000 genomes]
rs62136400	0.81[EUR][1000 genomes]
rs62136402	0.81[EUR][1000 genomes]
rs62137457	0.90[AMR][1000 genomes]
rs62138760	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62138819	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62138820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62138822	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62138823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62138824	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6745518	1.00[AMR][1000 genomes]
rs6751397	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73937268	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7582457	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64041800-64054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:64042800-64052400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:64043800-64049400	Enhancers	Liver	Liver
4	chr2:64044200-64054800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:64045200-64049200	Enhancers	HepG2	liver
6	chr2:64045600-64054200	Weak transcription	HSMM	muscle
7	chr2:64046000-64053600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:64046800-64055000	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:64047200-64050800	Weak transcription	Adipose Nuclei	Adipose
10	chr2:64047200-64054800	Weak transcription	Left Ventricle	heart
11	chr2:64047200-64055000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:64047800-64049200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:64047800-64051000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:64047800-64052400	Weak transcription	Fetal Heart	heart
15	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:64048400-64054400	Weak transcription	NHDF-Ad	bronchial
17	chr2:64048400-64054400	Weak transcription	NHLF	lung
18	chr2:64048400-64054600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr2:64048600-64054800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:64048600-64054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:64048600-64054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:64048800-64052400	Weak transcription	Aorta	Aorta
23	chr2:64048800-64054600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:64048800-64054800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links