Variant report

Variant	rs62136361
Chromosome Location	chr2:64064938-64064939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63924568..63927226-chr2:64063446..64066245,2	MCF-7	breast:
2	chr2:64037713..64041546-chr2:64062899..64066389,4	K562	blood:
3	chr2:64062736..64065296-chr2:64070326..64073549,3	K562	blood:
4	chr2:64011878..64014104-chr2:64062875..64065366,2	MCF-7	breast:
5	chr2:64023510..64026519-chr2:64063449..64067726,4	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13431437	1.00[ASN][1000 genomes]
rs17028099	1.00[ASN][1000 genomes]
rs17554748	1.00[ASN][1000 genomes]
rs28838707	1.00[ASN][1000 genomes]
rs3924029	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55748575	1.00[ASN][1000 genomes]
rs56342040	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57120200	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57329063	1.00[ASN][1000 genomes]
rs57413391	1.00[ASN][1000 genomes]
rs57844293	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57877849	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58208651	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58422338	1.00[ASN][1000 genomes]
rs58472560	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58495096	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59540641	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136362	0.95[EUR][1000 genomes]
rs62136364	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136366	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136367	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136369	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136391	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136393	0.81[EUR][1000 genomes]
rs62136397	0.81[EUR][1000 genomes]
rs62136400	0.81[EUR][1000 genomes]
rs62136402	0.81[EUR][1000 genomes]
rs62138760	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138819	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138820	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138823	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745518	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6751397	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937260	1.00[ASN][1000 genomes]
rs73937264	1.00[ASN][1000 genomes]
rs73937268	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601187	1.00[ASN][1000 genomes]
rs7606341	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:64055200-64067200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:64055400-64066400	Weak transcription	Psoas Muscle	Psoas
4	chr2:64059600-64066600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:64059600-64066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:64059800-64066800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:64061000-64067200	Weak transcription	Esophagus	oesophagus
8	chr2:64063000-64067200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr2:64063200-64065200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:64063400-64065000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:64063400-64067200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:64063400-64067200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:64063800-64066600	Enhancers	Dnd41	blood
14	chr2:64064000-64066000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:64064000-64066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:64064200-64065000	Enhancers	HSMMtube	muscle
17	chr2:64064200-64065200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:64064200-64065600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr2:64064400-64065200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:64064400-64065800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:64064400-64065800	Enhancers	Liver	Liver
22	chr2:64064400-64066000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:64064400-64067200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:64064600-64065800	Active TSS	Aorta	Aorta
25	chr2:64064600-64066800	Weak transcription	NHEK	skin
26	chr2:64064600-64067000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:64064600-64067000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr2:64064600-64067000	Weak transcription	HMEC	breast
29	chr2:64064600-64067200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr2:64064600-64067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:64064600-64067200	Weak transcription	Brain Angular Gyrus	brain
32	chr2:64064600-64067200	Weak transcription	Brain Hippocampus Middle	brain
33	chr2:64064600-64067200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:64064600-64067200	Weak transcription	Brain Substantia Nigra	brain
35	chr2:64064600-64067200	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:64064600-64067400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:64064800-64067000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr2:64064800-64067000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr2:64064800-64067200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:64064800-64067200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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