Variant report

Variant	rs62136369
Chromosome Location	chr2:64094829-64094830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64067489..64069560-chr2:64092679..64094973,2	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13431437	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17028099	1.00[ASN][1000 genomes]
rs17554748	1.00[ASN][1000 genomes]
rs28838707	1.00[ASN][1000 genomes]
rs3924029	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55748575	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56342040	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57120200	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57329063	1.00[ASN][1000 genomes]
rs57844293	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57877849	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58208651	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58422338	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58472560	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58495096	1.00[ASN][1000 genomes]
rs59540641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136361	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136362	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62136364	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136366	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136391	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136393	0.90[EUR][1000 genomes]
rs62136397	0.90[EUR][1000 genomes]
rs62136400	0.90[EUR][1000 genomes]
rs62136402	0.90[EUR][1000 genomes]
rs62138760	1.00[ASN][1000 genomes]
rs62138819	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138820	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138822	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138823	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138824	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745518	1.00[ASN][1000 genomes]
rs6751397	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937260	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937264	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937268	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7558570	0.82[EUR][1000 genomes]
rs7582457	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601187	1.00[ASN][1000 genomes]
rs7606341	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64070200-64103000	Weak transcription	Gastric	stomach
2	chr2:64077000-64100200	Weak transcription	Ovary	ovary
3	chr2:64078000-64108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:64081800-64100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:64082200-64100200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:64082200-64110000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:64083000-64123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:64083000-64129200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:64083200-64097800	Weak transcription	Right Atrium	heart
10	chr2:64083200-64110200	Weak transcription	Small Intestine	intestine
11	chr2:64083200-64110600	Weak transcription	Pancreas	Pancrea
12	chr2:64083600-64095400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr2:64084000-64095600	Genic enhancers	Dnd41	blood
14	chr2:64084600-64100000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:64085400-64095000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:64085400-64095400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:64085400-64096600	Weak transcription	Brain Angular Gyrus	brain
18	chr2:64085400-64096600	Weak transcription	Brain Substantia Nigra	brain
19	chr2:64085400-64098000	Weak transcription	Lung	lung
20	chr2:64085400-64098000	Weak transcription	Psoas Muscle	Psoas
21	chr2:64085400-64098400	Weak transcription	Aorta	Aorta
22	chr2:64085400-64100000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:64085400-64100600	Weak transcription	Spleen	Spleen
24	chr2:64085600-64102400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr2:64086600-64096600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:64086600-64110000	Weak transcription	Esophagus	oesophagus
27	chr2:64086800-64096600	Weak transcription	Brain Anterior Caudate	brain
28	chr2:64086800-64100400	Weak transcription	Fetal Brain Female	brain
29	chr2:64086800-64100800	Weak transcription	Fetal Kidney	kidney
30	chr2:64086800-64102800	Weak transcription	Right Ventricle	heart
31	chr2:64087200-64099800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:64087600-64101800	Genic enhancers	Liver	Liver
33	chr2:64088000-64100000	Weak transcription	K562	blood
34	chr2:64088000-64107800	Weak transcription	Colonic Mucosa	Colon
35	chr2:64088800-64095400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr2:64088800-64100600	Weak transcription	Fetal Stomach	stomach
37	chr2:64089000-64099800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:64089400-64095200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
39	chr2:64089800-64101400	Weak transcription	Fetal Brain Male	brain
40	chr2:64090000-64096400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:64090000-64096600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:64090000-64102000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr2:64090200-64098600	Weak transcription	Hela-S3	cervix
44	chr2:64090200-64100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:64090600-64096600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr2:64090600-64100600	Weak transcription	Fetal Intestine Small	intestine
47	chr2:64090600-64102800	Weak transcription	Stomach Mucosa	stomach
48	chr2:64091200-64096800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr2:64091400-64110000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr2:64091800-64098000	Weak transcription	NHLF	lung

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