Variant report

Variant	rs28838707
Chromosome Location	chr2:63933108-63933109
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10207257	0.81[AFR][1000 genomes]
rs13431437	1.00[ASN][1000 genomes]
rs17028099	1.00[ASN][1000 genomes]
rs17554748	1.00[ASN][1000 genomes]
rs3924029	1.00[ASN][1000 genomes]
rs55748575	1.00[ASN][1000 genomes]
rs56342040	1.00[ASN][1000 genomes]
rs57120200	1.00[ASN][1000 genomes]
rs57184962	1.00[ASN][1000 genomes]
rs57329063	1.00[ASN][1000 genomes]
rs57413391	1.00[ASN][1000 genomes]
rs57844293	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57877849	1.00[ASN][1000 genomes]
rs58208651	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58422338	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58472560	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58495096	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59540641	1.00[ASN][1000 genomes]
rs62136361	1.00[ASN][1000 genomes]
rs62136362	0.85[AFR][1000 genomes]
rs62136364	1.00[ASN][1000 genomes]
rs62136366	1.00[ASN][1000 genomes]
rs62136367	1.00[ASN][1000 genomes]
rs62136369	1.00[ASN][1000 genomes]
rs62136391	1.00[ASN][1000 genomes]
rs62138760	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138819	1.00[ASN][1000 genomes]
rs62138820	1.00[ASN][1000 genomes]
rs62138822	1.00[ASN][1000 genomes]
rs62138823	1.00[ASN][1000 genomes]
rs62138824	1.00[ASN][1000 genomes]
rs6745518	1.00[ASN][1000 genomes]
rs6751397	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73937260	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937264	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937268	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582457	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7601187	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926400-63935400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:63926800-63939800	Weak transcription	Adipose Nuclei	Adipose
3	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:63927200-63934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:63927200-63937200	Weak transcription	Psoas Muscle	Psoas
6	chr2:63931800-63935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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