Variant report

Variant	rs58495096
Chromosome Location	chr2:63946288-63946289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63946142..63947808-chr2:63959006..63961563,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13431437	1.00[ASN][1000 genomes]
rs17028099	1.00[ASN][1000 genomes]
rs17554748	1.00[ASN][1000 genomes]
rs28838707	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924029	1.00[ASN][1000 genomes]
rs55748575	1.00[ASN][1000 genomes]
rs56342040	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57120200	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57184962	1.00[ASN][1000 genomes]
rs57329063	1.00[ASN][1000 genomes]
rs57413391	1.00[ASN][1000 genomes]
rs57844293	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57877849	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58208651	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58422338	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58472560	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59540641	1.00[ASN][1000 genomes]
rs62136361	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136362	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62136364	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136366	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136367	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136369	1.00[ASN][1000 genomes]
rs62136391	1.00[ASN][1000 genomes]
rs62137457	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62138760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138819	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138820	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138822	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138823	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138824	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745518	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6751397	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937260	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937264	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601187	1.00[ASN][1000 genomes]
rs7606341	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63938400-63946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:63940600-63950600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:63943600-63947600	Weak transcription	Liver	Liver
6	chr2:63944600-63948400	Weak transcription	Pancreas	Pancrea
7	chr2:63945600-63948600	Enhancers	HepG2	liver
8	chr2:63946200-63946400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:63946200-63946600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:63946200-63946600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:63946200-63946600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:63946200-63946600	Enhancers	A549	lung
13	chr2:63946200-63946800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:63946200-63946800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr2:63946200-63947200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:63946200-63947400	Enhancers	Psoas Muscle	Psoas
17	chr2:63946200-63947800	Enhancers	Skeletal Muscle Female	skeletal muscle

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