Variant report

Variant	rs58208651
Chromosome Location	chr2:63991193-63991194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UGP2-2	chr2:63990887-63991234	NONHSAT071072

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10207257	0.87[AFR][1000 genomes]
rs13431437	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17028099	1.00[ASN][1000 genomes]
rs17554748	1.00[ASN][1000 genomes]
rs28838707	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3924029	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55748575	1.00[ASN][1000 genomes]
rs56342040	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57120200	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57184962	1.00[ASN][1000 genomes]
rs57329063	1.00[ASN][1000 genomes]
rs57413391	1.00[ASN][1000 genomes]
rs57844293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57877849	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58422338	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58472560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58495096	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59540641	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136361	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136362	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62136364	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136366	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136367	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136369	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136391	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136393	0.81[EUR][1000 genomes]
rs62136397	0.81[EUR][1000 genomes]
rs62136400	0.81[EUR][1000 genomes]
rs62136402	0.81[EUR][1000 genomes]
rs62137457	0.81[AMR][1000 genomes]
rs62138760	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138822	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138823	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62138824	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745518	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6751397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937260	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937264	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73937268	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601187	1.00[ASN][1000 genomes]
rs7606341	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63973000-63992800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:63985600-63992400	Weak transcription	Psoas Muscle	Psoas
4	chr2:63987000-63991400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:63989800-63993200	Enhancers	NHDF-Ad	bronchial
6	chr2:63990200-63991600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:63990200-63992400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:63990200-63992600	Enhancers	Osteobl	bone
9	chr2:63990200-63992800	Enhancers	NHLF	lung
10	chr2:63990400-63991400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:63990400-63991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:63990400-63993200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:63990600-63991200	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:63990600-63991400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:63990600-63991400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:63990600-63991400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:63990600-63991600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr2:63990600-63991600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:63990600-63991600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr2:63990600-63992400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:63990600-63992800	Enhancers	HSMMtube	muscle
22	chr2:63990800-63991200	Enhancers	Fetal Heart	heart
23	chr2:63990800-63991200	Enhancers	HepG2	liver
24	chr2:63990800-63991400	Enhancers	Adipose Nuclei	Adipose
25	chr2:63990800-63991600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:63990800-63991800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:63990800-63992000	Enhancers	NH-A	brain
28	chr2:63990800-63992200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:63990800-63992200	Enhancers	HSMM	muscle
30	chr2:63990800-63992600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr2:63990800-63993400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:63991000-63991600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr2:63991000-63992600	Enhancers	Muscle Satellite Cultured Cells	--

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