Variant report

Variant	rs62136362
Chromosome Location	chr2:64074037-64074038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64066407..64070482-chr2:64071096..64075382,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10207257	0.87[AFR][1000 genomes]
rs13431437	0.83[AFR][1000 genomes]
rs28838707	0.85[AFR][1000 genomes]
rs3924029	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55748575	0.81[AFR][1000 genomes]
rs56342040	0.95[EUR][1000 genomes]
rs57120200	0.95[EUR][1000 genomes]
rs57844293	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs57877849	0.95[EUR][1000 genomes]
rs58208651	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58422338	0.93[AFR][1000 genomes]
rs58472560	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58495096	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs59540641	0.86[EUR][1000 genomes]
rs62136361	0.95[EUR][1000 genomes]
rs62136364	1.00[EUR][1000 genomes]
rs62136366	1.00[EUR][1000 genomes]
rs62136367	1.00[EUR][1000 genomes]
rs62136369	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62136391	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62136393	0.86[EUR][1000 genomes]
rs62136397	0.86[EUR][1000 genomes]
rs62136400	0.86[EUR][1000 genomes]
rs62136402	0.86[EUR][1000 genomes]
rs62138760	0.85[EUR][1000 genomes]
rs62138819	0.95[EUR][1000 genomes]
rs62138820	0.95[EUR][1000 genomes]
rs62138822	0.95[EUR][1000 genomes]
rs62138823	0.95[EUR][1000 genomes]
rs62138824	0.95[EUR][1000 genomes]
rs6751397	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73937260	0.93[AFR][1000 genomes]
rs73937264	0.93[AFR][1000 genomes]
rs73937268	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7582457	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7606341	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64067000-64075800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr2:64067000-64076400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr2:64069400-64074600	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr2:64070000-64082800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:64070200-64076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:64070200-64084600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:64070200-64103000	Weak transcription	Gastric	stomach
8	chr2:64070400-64075800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:64070600-64074400	Weak transcription	A549	lung
10	chr2:64070600-64076600	Enhancers	Brain Substantia Nigra	brain
11	chr2:64070600-64082800	Weak transcription	Fetal Stomach	stomach
12	chr2:64070600-64083800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:64070800-64075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:64070800-64076000	Enhancers	Brain Hippocampus Middle	brain
15	chr2:64070800-64082600	Weak transcription	HUVEC	blood vessel
16	chr2:64071000-64074200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:64071000-64076200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:64071200-64074600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr2:64071200-64074600	Enhancers	HSMM	muscle
20	chr2:64071200-64075000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:64071200-64075000	Weak transcription	Brain Germinal Matrix	brain
22	chr2:64071200-64076000	Weak transcription	Fetal Kidney	kidney
23	chr2:64071200-64076200	Weak transcription	Fetal Lung	lung
24	chr2:64071200-64076400	Weak transcription	Fetal Brain Male	brain
25	chr2:64071200-64080600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr2:64071400-64074400	Enhancers	HSMMtube	muscle
27	chr2:64071400-64074600	Enhancers	Brain Cingulate Gyrus	brain
28	chr2:64071600-64074800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:64071600-64076400	Weak transcription	Stomach Mucosa	stomach
30	chr2:64071800-64076600	Weak transcription	Fetal Intestine Large	intestine
31	chr2:64071800-64076800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr2:64071800-64080200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr2:64071800-64080600	Weak transcription	Pancreas	Pancrea
34	chr2:64072000-64074400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:64072000-64075000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr2:64072000-64076000	Weak transcription	NH-A	brain
37	chr2:64072000-64076200	Weak transcription	Fetal Brain Female	brain
38	chr2:64072000-64076600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr2:64072000-64076600	Weak transcription	K562	blood
40	chr2:64072000-64080600	Weak transcription	Lung	lung
41	chr2:64072000-64081200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:64072000-64082800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr2:64072000-64082800	Weak transcription	Placenta	Placenta
44	chr2:64072000-64084200	Weak transcription	Esophagus	oesophagus
45	chr2:64072200-64076800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr2:64072200-64076800	Weak transcription	Fetal Thymus	thymus
47	chr2:64072200-64079600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr2:64072400-64074400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:64072400-64075200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:64072400-64075400	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell

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