Variant report

Variant	rs17028099
Chromosome Location	chr2:63918055-63918056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63917225..63919617-chr2:64067727..64070259,2	MCF-7	breast:
2	chr2:63917240..63919967-chr2:64076966..64079284,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13431437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17554748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28838707	1.00[ASN][1000 genomes]
rs3924029	1.00[ASN][1000 genomes]
rs55748575	1.00[ASN][1000 genomes]
rs56342040	1.00[ASN][1000 genomes]
rs57120200	1.00[ASN][1000 genomes]
rs57184962	1.00[ASN][1000 genomes]
rs57329063	1.00[ASN][1000 genomes]
rs57413391	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57844293	1.00[ASN][1000 genomes]
rs57877849	1.00[ASN][1000 genomes]
rs58208651	1.00[ASN][1000 genomes]
rs58422338	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58472560	1.00[ASN][1000 genomes]
rs58495096	1.00[ASN][1000 genomes]
rs59540641	1.00[ASN][1000 genomes]
rs62136361	1.00[ASN][1000 genomes]
rs62136364	1.00[ASN][1000 genomes]
rs62136366	1.00[ASN][1000 genomes]
rs62136367	1.00[ASN][1000 genomes]
rs62136369	1.00[ASN][1000 genomes]
rs62136391	1.00[ASN][1000 genomes]
rs62138760	1.00[ASN][1000 genomes]
rs62138819	1.00[ASN][1000 genomes]
rs62138820	1.00[ASN][1000 genomes]
rs62138822	1.00[ASN][1000 genomes]
rs62138823	1.00[ASN][1000 genomes]
rs62138824	1.00[ASN][1000 genomes]
rs6717478	1.00[ASN][1000 genomes]
rs6745518	1.00[ASN][1000 genomes]
rs6751397	1.00[ASN][1000 genomes]
rs73937260	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937264	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937268	1.00[ASN][1000 genomes]
rs7582457	1.00[ASN][1000 genomes]
rs7601187	1.00[ASN][1000 genomes]
rs7606341	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas

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