Variant report

Variant	rs62169872
Chromosome Location	chr2:114660237-114660238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114655812..114657969-chr2:114659213..114661113,3	MCF-7	breast:

rs_ID	r²[population]
rs10187984	0.80[EUR][1000 genomes]
rs12989186	0.82[EUR][1000 genomes]
rs12994293	1.00[AFR][1000 genomes]
rs13007764	1.00[AFR][1000 genomes]
rs13007971	0.82[EUR][1000 genomes]
rs13009390	0.82[EUR][1000 genomes]
rs13011381	0.82[EUR][1000 genomes]
rs13023889	0.82[EUR][1000 genomes]
rs13024337	0.82[EUR][1000 genomes]
rs13036249	0.82[EUR][1000 genomes]
rs13414001	0.80[EUR][1000 genomes]
rs17040412	0.82[EUR][1000 genomes]
rs17045321	0.82[EUR][1000 genomes]
rs17045324	0.82[EUR][1000 genomes]
rs34193182	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34308150	0.82[EUR][1000 genomes]
rs34764202	0.82[EUR][1000 genomes]
rs35131331	1.00[AFR][1000 genomes]
rs35308064	0.82[EUR][1000 genomes]
rs35328354	0.82[EUR][1000 genomes]
rs35363095	0.80[EUR][1000 genomes]
rs35821829	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35921649	0.82[EUR][1000 genomes]
rs62169873	0.82[EUR][1000 genomes]
rs62169876	0.82[EUR][1000 genomes]
rs62169884	1.00[AFR][1000 genomes]
rs66801277	0.82[EUR][1000 genomes]
rs6716919	0.82[EUR][1000 genomes]
rs6730338	0.82[EUR][1000 genomes]
rs6740522	0.82[EUR][1000 genomes]
rs7564594	0.82[EUR][1000 genomes]
rs7599403	0.82[EUR][1000 genomes]
rs7602149	0.80[EUR][1000 genomes]
rs7602644	0.82[EUR][1000 genomes]
rs9308688	0.80[EUR][1000 genomes]
rs9677951	0.82[EUR][1000 genomes]
rs9678565	0.82[EUR][1000 genomes]
rs9678689	0.82[EUR][1000 genomes]

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114667600	Weak transcription	Lung	lung
2	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
4	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
6	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
8	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
9	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
10	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:114653200-114662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:114653400-114662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:114654000-114660400	Enhancers	Primary B cells from peripheral blood	blood
16	chr2:114654000-114670000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr2:114654400-114667600	Weak transcription	Thymus	Thymus
18	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
19	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
20	chr2:114654800-114663400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:114654800-114666800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr2:114655400-114661000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:114655400-114663000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:114655600-114661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:114655600-114665400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr2:114655600-114665800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr2:114655600-114667600	Weak transcription	HMEC	breast
28	chr2:114655600-114667800	Weak transcription	Fetal Intestine Small	intestine
29	chr2:114655800-114661000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:114655800-114661800	Weak transcription	Fetal Brain Female	brain
31	chr2:114655800-114662000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr2:114655800-114665000	Weak transcription	Ovary	ovary
33	chr2:114655800-114672600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:114655800-114672600	Weak transcription	NHEK	skin
35	chr2:114656000-114661800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr2:114656000-114662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:114656600-114661800	Weak transcription	Brain Anterior Caudate	brain
38	chr2:114656600-114664600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr2:114656600-114668000	Weak transcription	NHLF	lung
40	chr2:114656800-114661000	Weak transcription	Fetal Thymus	thymus
41	chr2:114656800-114670800	Weak transcription	Dnd41	blood
42	chr2:114657200-114661400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:114657200-114661600	Weak transcription	HUVEC	blood vessel
44	chr2:114657400-114660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:114657400-114661000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr2:114657400-114661200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr2:114657400-114661400	Weak transcription	Brain Germinal Matrix	brain
48	chr2:114657400-114661800	Weak transcription	NHDF-Ad	bronchial
49	chr2:114657400-114662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:114657600-114661000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links