Variant report

Variant	rs35363095
Chromosome Location	chr2:114676392-114676393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:114668742..114673140-chr2:114673831..114676869,6	K562	blood:
2	chr2:114512877..114515552-chr2:114673985..114678016,3	K562	blood:
3	chr2:114647540..114650336-chr2:114674898..114676780,2	K562	blood:
4	chr2:114669911..114672374-chr2:114673667..114676580,4	K562	blood:
5	chr2:114645266..114650561-chr2:114670334..114676393,6	MCF-7	breast:
6	chr2:114649589..114651914-chr2:114675375..114678075,2	MCF-7	breast:
7	chr2:114512877..114514598-chr2:114675110..114678016,2	K562	blood:
8	chr2:114647540..114651375-chr2:114674898..114677081,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10187984	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10199075	0.83[EUR][1000 genomes]
rs1022411	0.85[EUR][1000 genomes]
rs11899899	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12711789	0.85[EUR][1000 genomes]
rs12711791	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12988574	0.88[EUR][1000 genomes]
rs12989186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12992256	0.85[EUR][1000 genomes]
rs13000991	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13001665	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13004463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13006608	0.93[EUR][1000 genomes]
rs13006901	0.83[EUR][1000 genomes]
rs13007764	0.88[EUR][1000 genomes]
rs13007971	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13009390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13011381	0.97[EUR][1000 genomes]
rs13020063	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13021259	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13023889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13024337	0.97[EUR][1000 genomes]
rs13031774	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13031792	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13036249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13397191	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13414001	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13425176	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17040412	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17045321	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17045324	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17045956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28376055	0.82[AMR][1000 genomes]
rs34011463	0.88[EUR][1000 genomes]
rs34084885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34193182	0.97[EUR][1000 genomes]
rs34244501	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34267159	0.85[EUR][1000 genomes]
rs34278749	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34280871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34308150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34380051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34446531	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34496519	0.88[EUR][1000 genomes]
rs34574779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34699644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34764202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34767335	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34819185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34859032	0.83[EUR][1000 genomes]
rs34868595	0.88[EUR][1000 genomes]
rs35024634	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35047042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35086061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35131331	0.88[EUR][1000 genomes]
rs35147957	0.85[EUR][1000 genomes]
rs35201383	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35308064	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35310217	0.85[EUR][1000 genomes]
rs35328354	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35503998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35821829	0.97[EUR][1000 genomes]
rs35881779	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35921649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36040648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36079093	0.88[EUR][1000 genomes]
rs55688180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55923556	0.85[EUR][1000 genomes]
rs62169872	0.80[EUR][1000 genomes]
rs62169873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62169876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62169884	0.93[EUR][1000 genomes]
rs62169886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169932	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169933	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62171765	0.88[EUR][1000 genomes]
rs62171766	0.88[EUR][1000 genomes]
rs66541229	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66563583	0.88[EUR][1000 genomes]
rs66720895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66801277	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6707751	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6710288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6710525	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6713995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6716919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6718539	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6730338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6730373	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67368963	0.85[EUR][1000 genomes]
rs6740522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6757220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67903387	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72835421	0.85[EUR][1000 genomes]
rs7564594	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7599403	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7602149	0.95[EUR][1000 genomes]
rs7602644	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9308688	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9677247	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9677951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9678565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9678689	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9679712	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9941605	0.85[EUR][1000 genomes]
rs9941668	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35363095	ACTR3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
5	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
6	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
10	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
13	chr2:114668200-114704800	Weak transcription	Gastric	stomach
14	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
15	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
16	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:114669000-114686400	Weak transcription	Brain Angular Gyrus	brain
19	chr2:114669200-114686400	Weak transcription	Brain Substantia Nigra	brain
20	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:114669600-114676400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:114670200-114677200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:114670200-114679800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:114670200-114680800	Strong transcription	A549	lung
25	chr2:114670200-114680800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr2:114670800-114677200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr2:114670800-114679400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr2:114670800-114680600	Strong transcription	Primary B cells from cord blood	blood
29	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
31	chr2:114670800-114719000	Strong transcription	Dnd41	blood
32	chr2:114671000-114676600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr2:114671000-114677200	Strong transcription	NHDF-Ad	bronchial
34	chr2:114671000-114677400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr2:114671000-114677400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr2:114671000-114677800	Strong transcription	NH-A	brain
37	chr2:114671000-114678600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:114671000-114679000	Strong transcription	HSMM	muscle
39	chr2:114671000-114681200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr2:114671000-114684600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr2:114671200-114677600	Strong transcription	Osteobl	bone
45	chr2:114671200-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:114671200-114694000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:114671600-114678400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:114672400-114677000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr2:114672400-114677400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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