Variant report

Variant	rs13011381
Chromosome Location	chr2:114656840-114656841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114655812..114657969-chr2:114659213..114661113,3	MCF-7	breast:
2	chr2:114656542..114659348-chr2:114663308..114664810,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10187984	0.97[EUR][1000 genomes]
rs10199075	0.85[EUR][1000 genomes]
rs1022411	0.88[EUR][1000 genomes]
rs11899899	0.88[EUR][1000 genomes]
rs12711789	0.88[EUR][1000 genomes]
rs12711791	0.88[EUR][1000 genomes]
rs12988574	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12989186	1.00[EUR][1000 genomes]
rs12992256	0.88[EUR][1000 genomes]
rs13000991	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13001665	0.95[EUR][1000 genomes]
rs13004463	0.90[EUR][1000 genomes]
rs13006608	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13006901	0.85[EUR][1000 genomes]
rs13007764	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13007971	1.00[EUR][1000 genomes]
rs13009390	1.00[EUR][1000 genomes]
rs13020063	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13021259	0.90[EUR][1000 genomes]
rs13023889	1.00[EUR][1000 genomes]
rs13024337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13031774	0.93[EUR][1000 genomes]
rs13031792	0.95[EUR][1000 genomes]
rs13036249	1.00[EUR][1000 genomes]
rs13397191	0.88[EUR][1000 genomes]
rs13414001	0.97[EUR][1000 genomes]
rs13425176	0.88[EUR][1000 genomes]
rs17040412	1.00[EUR][1000 genomes]
rs17045321	1.00[EUR][1000 genomes]
rs17045324	1.00[EUR][1000 genomes]
rs17045956	0.95[EUR][1000 genomes]
rs28376055	0.80[EUR][1000 genomes]
rs34011463	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34084885	0.90[EUR][1000 genomes]
rs34193182	1.00[EUR][1000 genomes]
rs34244501	0.90[EUR][1000 genomes]
rs34267159	0.88[EUR][1000 genomes]
rs34278749	0.90[EUR][1000 genomes]
rs34280871	0.90[EUR][1000 genomes]
rs34308150	1.00[EUR][1000 genomes]
rs34380051	0.90[EUR][1000 genomes]
rs34446531	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34496519	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34574779	0.90[EUR][1000 genomes]
rs34699644	0.90[EUR][1000 genomes]
rs34764202	1.00[EUR][1000 genomes]
rs34767335	0.90[EUR][1000 genomes]
rs34819185	0.95[EUR][1000 genomes]
rs34859032	0.85[EUR][1000 genomes]
rs34868595	0.90[EUR][1000 genomes]
rs35024634	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35047042	0.90[EUR][1000 genomes]
rs35086061	0.87[EUR][1000 genomes]
rs35131331	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35147957	0.88[EUR][1000 genomes]
rs35201383	0.83[EUR][1000 genomes]
rs35308064	1.00[EUR][1000 genomes]
rs35310217	0.88[EUR][1000 genomes]
rs35328354	1.00[EUR][1000 genomes]
rs35363095	0.97[EUR][1000 genomes]
rs35503998	0.90[EUR][1000 genomes]
rs35821829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35881779	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35921649	1.00[EUR][1000 genomes]
rs36040648	0.95[EUR][1000 genomes]
rs36079093	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55688180	0.93[EUR][1000 genomes]
rs55923556	0.88[EUR][1000 genomes]
rs62169872	0.82[EUR][1000 genomes]
rs62169873	1.00[EUR][1000 genomes]
rs62169876	1.00[EUR][1000 genomes]
rs62169884	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62169886	0.90[EUR][1000 genomes]
rs62169890	0.90[EUR][1000 genomes]
rs62169928	0.90[EUR][1000 genomes]
rs62169932	0.90[EUR][1000 genomes]
rs62169933	0.90[EUR][1000 genomes]
rs62171765	0.90[EUR][1000 genomes]
rs62171766	0.90[EUR][1000 genomes]
rs66541229	0.90[EUR][1000 genomes]
rs66563583	0.90[EUR][1000 genomes]
rs66720895	0.90[EUR][1000 genomes]
rs66801277	1.00[EUR][1000 genomes]
rs6707751	0.88[EUR][1000 genomes]
rs6710288	0.90[EUR][1000 genomes]
rs6710525	0.88[EUR][1000 genomes]
rs6713995	0.90[EUR][1000 genomes]
rs6716919	1.00[EUR][1000 genomes]
rs6718539	0.88[EUR][1000 genomes]
rs6730338	1.00[EUR][1000 genomes]
rs6730373	0.95[EUR][1000 genomes]
rs67368963	0.88[EUR][1000 genomes]
rs6740522	1.00[EUR][1000 genomes]
rs6757220	0.95[EUR][1000 genomes]
rs67903387	0.93[EUR][1000 genomes]
rs72835421	0.88[EUR][1000 genomes]
rs7564594	1.00[EUR][1000 genomes]
rs7599403	1.00[EUR][1000 genomes]
rs7602149	0.97[EUR][1000 genomes]
rs7602644	1.00[EUR][1000 genomes]
rs9308688	0.97[EUR][1000 genomes]
rs9677247	0.95[EUR][1000 genomes]
rs9677951	1.00[EUR][1000 genomes]
rs9678565	1.00[EUR][1000 genomes]
rs9678689	1.00[EUR][1000 genomes]
rs9679712	0.95[EUR][1000 genomes]
rs9941605	0.88[EUR][1000 genomes]
rs9941668	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13011381	ACTR3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
5	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
7	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
8	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
9	chr2:114651600-114658000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:114652000-114658000	Weak transcription	Pancreas	Pancrea
11	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
13	chr2:114652200-114658000	Enhancers	Duodenum Mucosa	Duodenum
14	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
15	chr2:114652400-114657200	Enhancers	HUVEC	blood vessel
16	chr2:114652400-114657800	Weak transcription	Aorta	Aorta
17	chr2:114652400-114657800	Weak transcription	Colonic Mucosa	Colon
18	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
19	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:114653000-114658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:114653000-114659600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:114653200-114658200	Enhancers	Liver	Liver
23	chr2:114653200-114658400	Enhancers	A549	lung
24	chr2:114653200-114659200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr2:114653200-114662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:114653400-114659000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:114653400-114662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr2:114653600-114658200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr2:114653800-114657400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr2:114653800-114658000	Weak transcription	Spleen	Spleen
33	chr2:114653800-114658400	Enhancers	Osteobl	bone
34	chr2:114653800-114658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:114653800-114659000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:114654000-114657400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr2:114654000-114657600	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr2:114654000-114660400	Enhancers	Primary B cells from peripheral blood	blood
39	chr2:114654000-114670000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr2:114654200-114658000	Enhancers	Colon Smooth Muscle	Colon
41	chr2:114654200-114659200	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr2:114654400-114657800	Weak transcription	Brain Angular Gyrus	brain
43	chr2:114654400-114667600	Weak transcription	Thymus	Thymus
44	chr2:114654600-114657400	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr2:114654600-114657400	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr2:114654600-114658400	Weak transcription	Right Atrium	heart
47	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
48	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
49	chr2:114654800-114657200	Weak transcription	Fetal Lung	lung
50	chr2:114654800-114658000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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