Variant report

Variant	rs34699644
Chromosome Location	chr2:114718043-114718044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114717441..114718963-chr2:114722570..114724264,2	K562	blood:
2	chr2:114716145..114718246-chr2:114720368..114722202,3	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10187984	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11899899	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12711791	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12988574	1.00[EUR][1000 genomes]
rs12989186	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13000991	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13001665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13004463	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13006608	0.95[EUR][1000 genomes]
rs13007764	1.00[EUR][1000 genomes]
rs13007971	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13009390	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13011381	0.90[EUR][1000 genomes]
rs13020063	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13021259	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13023889	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13024337	0.90[EUR][1000 genomes]
rs13031774	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13031792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13036249	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13397191	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13414001	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13425176	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17040412	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17045321	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17045324	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17045956	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28376055	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34011463	1.00[EUR][1000 genomes]
rs34084885	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34193182	0.90[EUR][1000 genomes]
rs34244501	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34278749	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34280871	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34308150	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34380051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34446531	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34496519	1.00[EUR][1000 genomes]
rs34574779	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34764202	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34767335	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34819185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34868595	0.80[EUR][1000 genomes]
rs35024634	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35047042	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35086061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35131331	1.00[EUR][1000 genomes]
rs35201383	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35308064	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35328354	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35363095	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35503998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35821829	0.90[EUR][1000 genomes]
rs35881779	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35921649	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36040648	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36079093	1.00[EUR][1000 genomes]
rs55688180	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62169873	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62169876	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62169884	0.95[EUR][1000 genomes]
rs62169886	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62169890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62169928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62169932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62169933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62171765	0.80[EUR][1000 genomes]
rs62171766	0.80[EUR][1000 genomes]
rs66541229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66563583	0.80[EUR][1000 genomes]
rs66720895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66801277	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6707751	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6710288	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710525	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6713995	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6716919	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6718539	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6730338	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6730373	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6740522	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6757220	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67903387	0.83[EUR][1000 genomes]
rs7564594	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7599403	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7602149	0.88[EUR][1000 genomes]
rs7602644	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9308688	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9677247	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9677951	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9678565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9678689	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9679712	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34699644	ACTR3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
3	chr2:114670800-114719000	Strong transcription	Dnd41	blood
4	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:114681600-114719400	Strong transcription	NH-A	brain
9	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
14	chr2:114687000-114718200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:114687400-114719400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:114688400-114719200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:114688600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:114691800-114719800	Strong transcription	HSMM	muscle
19	chr2:114693200-114720000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr2:114695200-114720200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr2:114696000-114720200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:114696400-114718800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:114696400-114719400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr2:114696600-114719200	Strong transcription	GM12878-XiMat	blood
25	chr2:114696600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:114696600-114719400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr2:114701600-114720200	Weak transcription	Fetal Heart	heart
28	chr2:114703600-114719800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr2:114703600-114720000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:114703600-114722400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:114705000-114720400	Weak transcription	Psoas Muscle	Psoas
32	chr2:114705200-114731200	Weak transcription	Lung	lung
33	chr2:114705200-114733000	Weak transcription	Pancreas	Pancrea
34	chr2:114705200-114734200	Weak transcription	Right Ventricle	heart
35	chr2:114705200-114736000	Weak transcription	Gastric	stomach
36	chr2:114705200-114737600	Weak transcription	Esophagus	oesophagus
37	chr2:114706200-114723000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:114706200-114723600	Weak transcription	Brain Hippocampus Middle	brain
39	chr2:114706200-114723800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr2:114706200-114731400	Weak transcription	Aorta	Aorta
41	chr2:114706200-114731400	Weak transcription	Spleen	Spleen
42	chr2:114706400-114720800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr2:114707000-114719400	Strong transcription	Primary B cells from cord blood	blood
44	chr2:114707400-114726800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:114708400-114718800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr2:114709200-114731200	Weak transcription	Fetal Kidney	kidney
47	chr2:114710400-114728000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr2:114710400-114735800	Weak transcription	Colonic Mucosa	Colon
49	chr2:114710600-114725400	Weak transcription	Small Intestine	intestine
50	chr2:114710600-114727400	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links