Variant report

Variant	rs6710525
Chromosome Location	chr2:114695568-114695569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114685102..114687556-chr2:114692653..114695643,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10187984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10199075	1.00[CEU][hapmap]
rs1022411	0.81[EUR][1000 genomes]
rs1028246	1.00[CEU][hapmap]
rs11899895	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11899899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12711789	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12711791	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12988574	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12989186	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12992256	0.81[EUR][1000 genomes]
rs13000991	0.97[EUR][1000 genomes]
rs13001665	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13004463	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13006608	0.93[EUR][1000 genomes]
rs13006901	1.00[CEU][hapmap]
rs13007764	0.97[EUR][1000 genomes]
rs13007971	0.88[EUR][1000 genomes]
rs13009390	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13011381	0.88[EUR][1000 genomes]
rs13020063	0.97[EUR][1000 genomes]
rs13021259	1.00[CEU][hapmap]
rs13023889	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13024337	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13031774	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13031792	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13036249	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13397191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13414001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13425176	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040412	0.88[EUR][1000 genomes]
rs17045321	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17045324	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17045956	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28376055	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34011463	0.97[EUR][1000 genomes]
rs34084885	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34193182	0.88[EUR][1000 genomes]
rs34280871	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34308150	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34380051	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34446531	0.97[EUR][1000 genomes]
rs34496519	0.97[EUR][1000 genomes]
rs34574779	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34699644	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34764202	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34819185	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35024634	0.93[EUR][1000 genomes]
rs35047042	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35086061	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35131331	0.97[EUR][1000 genomes]
rs35147957	0.81[EUR][1000 genomes]
rs35201383	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35308064	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35310217	0.81[EUR][1000 genomes]
rs35328354	0.88[EUR][1000 genomes]
rs35363095	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35503998	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35821829	0.88[EUR][1000 genomes]
rs35881779	0.97[EUR][1000 genomes]
rs35921649	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36040648	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36079093	0.97[EUR][1000 genomes]
rs4848357	1.00[CEU][hapmap]
rs55688180	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55923556	0.81[EUR][1000 genomes]
rs62169873	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169876	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169884	0.93[EUR][1000 genomes]
rs62169886	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62169890	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62169928	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62169932	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62169933	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6542176	1.00[CEU][hapmap]
rs66541229	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66720895	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66801277	0.88[EUR][1000 genomes]
rs6707751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710288	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6713995	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6716919	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6718539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6730338	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6730373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6740522	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6743807	1.00[CEU][hapmap]
rs6757220	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67903387	0.81[EUR][1000 genomes]
rs7564594	0.88[EUR][1000 genomes]
rs7599403	0.88[EUR][1000 genomes]
rs7602149	0.90[EUR][1000 genomes]
rs7602644	0.88[EUR][1000 genomes]
rs9308688	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9677247	0.83[EUR][1000 genomes]
rs9677951	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9678565	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9678689	0.88[EUR][1000 genomes]
rs9679712	0.83[EUR][1000 genomes]
rs9941605	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9941668	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6710525	ACTR3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
5	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
6	chr2:114668200-114704800	Weak transcription	Gastric	stomach
7	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
8	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
9	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
11	chr2:114670800-114719000	Strong transcription	Dnd41	blood
12	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
18	chr2:114676200-114696200	Weak transcription	Pancreas	Pancrea
19	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
20	chr2:114676600-114695800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:114680200-114703200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:114681600-114719400	Strong transcription	NH-A	brain
26	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:114683000-114715800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:114683400-114696000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
33	chr2:114683600-114696000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr2:114684400-114696000	Weak transcription	Lung	lung
35	chr2:114684800-114697600	Weak transcription	Colonic Mucosa	Colon
36	chr2:114687000-114718200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:114687200-114698400	Weak transcription	Brain Angular Gyrus	brain
38	chr2:114687400-114719400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr2:114687600-114696000	Weak transcription	Right Ventricle	heart
40	chr2:114687600-114704800	Weak transcription	Aorta	Aorta
41	chr2:114687600-114704800	Weak transcription	Fetal Stomach	stomach
42	chr2:114687800-114696000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr2:114688200-114715200	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr2:114688400-114719200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr2:114688600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr2:114688800-114699600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:114689000-114711000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:114689400-114715200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr2:114689400-114716800	Strong transcription	Placenta	Placenta
50	chr2:114690600-114699200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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