Variant report

Variant	rs35147957
Chromosome Location	chr2:114618001-114618002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114616510..114619401-chr2:114621099..114622911,3	MCF-7	breast:
2	chr2:114613097..114614996-chr2:114615695..114618049,2	MCF-7	breast:
3	chr2:114615060..114620360-chr2:114646762..114649306,5	K562	blood:
4	chr2:114616591..114618649-chr2:114620740..114623344,2	K562	blood:
5	chr2:114513945..114515465-chr2:114617001..114618748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115084	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10187984	0.90[EUR][1000 genomes]
rs10199075	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1022411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899899	0.81[EUR][1000 genomes]
rs12711789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12711791	0.81[EUR][1000 genomes]
rs12989186	0.88[EUR][1000 genomes]
rs12992256	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13001665	0.83[EUR][1000 genomes]
rs13006608	0.83[EUR][1000 genomes]
rs13006901	0.93[EUR][1000 genomes]
rs13007971	0.88[EUR][1000 genomes]
rs13009390	0.88[EUR][1000 genomes]
rs13011381	0.88[EUR][1000 genomes]
rs13021259	0.97[EUR][1000 genomes]
rs13023889	0.88[EUR][1000 genomes]
rs13024337	0.88[EUR][1000 genomes]
rs13031774	0.85[EUR][1000 genomes]
rs13031792	0.83[EUR][1000 genomes]
rs13036249	0.88[EUR][1000 genomes]
rs13397191	0.81[EUR][1000 genomes]
rs13414001	0.90[EUR][1000 genomes]
rs13425176	0.81[EUR][1000 genomes]
rs17040412	0.88[EUR][1000 genomes]
rs17045321	0.88[EUR][1000 genomes]
rs17045324	0.88[EUR][1000 genomes]
rs17045956	0.83[EUR][1000 genomes]
rs34193182	0.88[EUR][1000 genomes]
rs34244501	0.97[EUR][1000 genomes]
rs34267159	0.95[EUR][1000 genomes]
rs34278749	0.97[EUR][1000 genomes]
rs34308150	0.88[EUR][1000 genomes]
rs34764202	0.88[EUR][1000 genomes]
rs34767335	0.97[EUR][1000 genomes]
rs34819185	0.83[EUR][1000 genomes]
rs34859032	0.93[EUR][1000 genomes]
rs34868595	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35308064	0.88[EUR][1000 genomes]
rs35310217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35328354	0.88[EUR][1000 genomes]
rs35363095	0.85[EUR][1000 genomes]
rs35821829	0.88[EUR][1000 genomes]
rs35921649	0.88[EUR][1000 genomes]
rs36040648	0.83[EUR][1000 genomes]
rs4848357	0.89[EUR][1000 genomes]
rs55688180	0.81[EUR][1000 genomes]
rs55923556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62169873	0.88[EUR][1000 genomes]
rs62169876	0.88[EUR][1000 genomes]
rs62169884	0.83[EUR][1000 genomes]
rs62171765	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62171766	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66563583	0.97[EUR][1000 genomes]
rs66801277	0.88[EUR][1000 genomes]
rs6707751	0.81[EUR][1000 genomes]
rs6710525	0.81[EUR][1000 genomes]
rs6716919	0.88[EUR][1000 genomes]
rs6718539	0.81[EUR][1000 genomes]
rs6730338	0.88[EUR][1000 genomes]
rs6730373	0.88[EUR][1000 genomes]
rs67368963	0.95[EUR][1000 genomes]
rs6740522	0.88[EUR][1000 genomes]
rs6757220	0.83[EUR][1000 genomes]
rs67903387	0.81[EUR][1000 genomes]
rs72835421	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7564594	0.88[EUR][1000 genomes]
rs7599403	0.88[EUR][1000 genomes]
rs7602149	0.90[EUR][1000 genomes]
rs7602644	0.88[EUR][1000 genomes]
rs9308688	0.90[EUR][1000 genomes]
rs9677247	0.93[EUR][1000 genomes]
rs9677951	0.88[EUR][1000 genomes]
rs9678565	0.88[EUR][1000 genomes]
rs9678689	0.88[EUR][1000 genomes]
rs9679712	0.83[EUR][1000 genomes]
rs9941605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9941668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35147957	ACTR3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
2	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:114606200-114621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:114611600-114623400	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:114612800-114626000	Weak transcription	Thymus	Thymus
9	chr2:114613200-114631400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:114614000-114621800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:114615000-114621200	Enhancers	GM12878-XiMat	blood
12	chr2:114615600-114619600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr2:114615600-114619800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:114616600-114619400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:114616800-114618400	Weak transcription	Primary T cells from cord blood	blood
16	chr2:114617000-114618200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:114617000-114618400	Weak transcription	K562	blood
18	chr2:114617000-114618600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:114617000-114619400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:114617400-114618600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr2:114617400-114619800	Enhancers	Primary B cells from cord blood	blood

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