Variant report

Variant	rs13006901
Chromosome Location	chr2:114586100-114586101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114586068..114588684-chr2:114646447..114649320,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10187984	0.83[EUR][1000 genomes]
rs10199075	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1022411	0.93[EUR][1000 genomes]
rs1028246	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs12711789	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12988574	1.00[CEU][hapmap]
rs12989186	0.85[EUR][1000 genomes]
rs12992256	0.93[EUR][1000 genomes]
rs12996253	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13001665	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13006608	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13007764	0.80[AMR][1000 genomes]
rs13007971	0.85[EUR][1000 genomes]
rs13009390	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs13011381	0.85[EUR][1000 genomes]
rs13021259	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13023889	0.85[EUR][1000 genomes]
rs13024337	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13031792	0.81[EUR][1000 genomes]
rs13036249	0.85[EUR][1000 genomes]
rs13414001	0.83[EUR][1000 genomes]
rs13425176	1.00[CEU][hapmap]
rs1403400	0.85[EUR][1000 genomes]
rs17040412	0.85[EUR][1000 genomes]
rs17045321	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17045324	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17045956	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs34011463	0.80[AMR][1000 genomes]
rs34193182	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34244501	0.95[EUR][1000 genomes]
rs34267159	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34278749	0.95[EUR][1000 genomes]
rs34308150	0.85[EUR][1000 genomes]
rs34496519	0.80[AMR][1000 genomes]
rs34764202	0.85[EUR][1000 genomes]
rs34767335	0.95[EUR][1000 genomes]
rs34819185	0.81[EUR][1000 genomes]
rs34859032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34868595	0.95[EUR][1000 genomes]
rs35131331	0.80[AMR][1000 genomes]
rs35147957	0.93[EUR][1000 genomes]
rs35308064	0.85[EUR][1000 genomes]
rs35310217	0.93[EUR][1000 genomes]
rs35328354	0.85[EUR][1000 genomes]
rs35363095	0.83[EUR][1000 genomes]
rs35821829	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35921649	0.85[EUR][1000 genomes]
rs36040648	0.81[EUR][1000 genomes]
rs36079093	0.80[AMR][1000 genomes]
rs4241125	0.85[EUR][1000 genomes]
rs4848355	0.85[EUR][1000 genomes]
rs4848357	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs55923556	0.93[EUR][1000 genomes]
rs62169873	0.85[EUR][1000 genomes]
rs62169876	0.85[EUR][1000 genomes]
rs62169884	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62171765	0.95[EUR][1000 genomes]
rs62171766	0.95[EUR][1000 genomes]
rs6542176	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs66563583	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66801277	0.85[EUR][1000 genomes]
rs6710525	1.00[CEU][hapmap]
rs6716919	0.85[EUR][1000 genomes]
rs6730338	0.85[EUR][1000 genomes]
rs6730373	0.81[EUR][1000 genomes]
rs67368963	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6740522	0.85[EUR][1000 genomes]
rs6743807	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6757220	0.81[EUR][1000 genomes]
rs72835421	0.98[EUR][1000 genomes]
rs7564594	0.85[EUR][1000 genomes]
rs7573922	0.85[EUR][1000 genomes]
rs7599403	0.85[EUR][1000 genomes]
rs7602149	0.83[EUR][1000 genomes]
rs7602644	0.85[EUR][1000 genomes]
rs9308688	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs9677247	0.90[EUR][1000 genomes]
rs9677951	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs9678565	0.85[EUR][1000 genomes]
rs9678689	0.85[EUR][1000 genomes]
rs9679712	0.81[EUR][1000 genomes]
rs9941605	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9941668	0.93[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13006901	ACTR3	cis	Skin Sun Exposed Lower leg	GTEx
rs13006901	SERPINB2	trans	lymphoblastoid	seeQTL
rs13006901	SIGLEC14	trans	lymphoblastoid	seeQTL
rs13006901	LASS6	trans	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114576400-114588400	Weak transcription	Esophagus	oesophagus
3	chr2:114580400-114588600	Weak transcription	K562	blood
4	chr2:114582400-114586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:114584600-114595600	Weak transcription	HepG2	liver
6	chr2:114584800-114592000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:114585400-114586400	Enhancers	Fetal Intestine Large	intestine
8	chr2:114585600-114586800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:114585600-114588400	Weak transcription	NHEK	skin
10	chr2:114585600-114588600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:114585800-114588600	Weak transcription	HMEC	breast
12	chr2:114585800-114588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:114586000-114586400	Strong transcription	Primary T cells from cord blood	blood
14	chr2:114586000-114588400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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