Variant report

Variant	rs62180308
Chromosome Location	chr2:63343035-63343036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10169579	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10203263	0.91[EUR][1000 genomes]
rs13411657	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13417792	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13422328	0.88[EUR][1000 genomes]
rs13427868	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13431765	0.90[EUR][1000 genomes]
rs17348134	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17408652	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17408841	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17432684	0.91[EUR][1000 genomes]
rs17432775	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1850984	0.90[EUR][1000 genomes]
rs2421862	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58483312	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62177782	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62177789	0.88[EUR][1000 genomes]
rs62177790	0.90[EUR][1000 genomes]
rs62177791	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62177795	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180269	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180275	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180276	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180310	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62180312	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62180314	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180316	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180317	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180320	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180322	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62180323	0.90[EUR][1000 genomes]
rs62180324	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180325	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6718609	0.89[EUR][1000 genomes]
rs7568224	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7605319	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63342600-63349600	Weak transcription	Brain Inferior Temporal Lobe	brain

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