Variant report

Variant	rs62180317
Chromosome Location	chr2:63379698-63379699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10169209	1.00[ASN][1000 genomes]
rs10169292	1.00[ASN][1000 genomes]
rs10169579	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10173637	1.00[ASN][1000 genomes]
rs10203263	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10207356	1.00[ASN][1000 genomes]
rs10209822	1.00[ASN][1000 genomes]
rs11125957	1.00[ASN][1000 genomes]
rs11125965	1.00[ASN][1000 genomes]
rs11675647	1.00[ASN][1000 genomes]
rs11684108	1.00[ASN][1000 genomes]
rs11685910	1.00[ASN][1000 genomes]
rs11686044	1.00[ASN][1000 genomes]
rs11691166	1.00[ASN][1000 genomes]
rs11691357	1.00[ASN][1000 genomes]
rs11691718	1.00[ASN][1000 genomes]
rs12151606	0.83[ASN][1000 genomes]
rs12612773	0.92[ASN][1000 genomes]
rs12618974	1.00[ASN][1000 genomes]
rs12623431	1.00[ASN][1000 genomes]
rs12713476	1.00[ASN][1000 genomes]
rs12713477	1.00[ASN][1000 genomes]
rs12713478	1.00[ASN][1000 genomes]
rs12992737	0.83[ASN][1000 genomes]
rs12994711	1.00[ASN][1000 genomes]
rs13011799	0.92[ASN][1000 genomes]
rs13020171	1.00[ASN][1000 genomes]
rs13387839	0.86[ASN][1000 genomes]
rs13411657	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13417792	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13422328	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13427868	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13431765	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1400686	1.00[ASN][1000 genomes]
rs1400687	1.00[ASN][1000 genomes]
rs1400688	1.00[ASN][1000 genomes]
rs1517401	1.00[ASN][1000 genomes]
rs1517402	1.00[ASN][1000 genomes]
rs1517404	1.00[ASN][1000 genomes]
rs1517405	1.00[ASN][1000 genomes]
rs1517409	0.92[ASN][1000 genomes]
rs1589092	1.00[ASN][1000 genomes]
rs1607203	1.00[ASN][1000 genomes]
rs1607204	1.00[ASN][1000 genomes]
rs1607205	1.00[ASN][1000 genomes]
rs1607206	1.00[ASN][1000 genomes]
rs17348134	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17408652	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17408841	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432684	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17432775	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850984	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2030188	1.00[ASN][1000 genomes]
rs2030189	1.00[ASN][1000 genomes]
rs2090478	1.00[ASN][1000 genomes]
rs2090479	1.00[ASN][1000 genomes]
rs2176417	1.00[ASN][1000 genomes]
rs2176418	0.92[ASN][1000 genomes]
rs2263636	1.00[ASN][1000 genomes]
rs2292794	1.00[ASN][1000 genomes]
rs2292795	1.00[ASN][1000 genomes]
rs2421862	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421881	1.00[ASN][1000 genomes]
rs2421883	1.00[ASN][1000 genomes]
rs2421884	1.00[ASN][1000 genomes]
rs2421886	1.00[ASN][1000 genomes]
rs2421887	1.00[ASN][1000 genomes]
rs2464042	1.00[ASN][1000 genomes]
rs2677436	0.96[ASN][1000 genomes]
rs2677437	1.00[ASN][1000 genomes]
rs2677438	1.00[ASN][1000 genomes]
rs2677442	1.00[ASN][1000 genomes]
rs2699388	1.00[ASN][1000 genomes]
rs2699389	1.00[ASN][1000 genomes]
rs2699390	1.00[ASN][1000 genomes]
rs2699391	1.00[ASN][1000 genomes]
rs2699399	1.00[ASN][1000 genomes]
rs2901580	1.00[ASN][1000 genomes]
rs2945032	1.00[ASN][1000 genomes]
rs2951185	1.00[ASN][1000 genomes]
rs2951186	0.92[ASN][1000 genomes]
rs2951192	1.00[ASN][1000 genomes]
rs4313961	0.92[ASN][1000 genomes]
rs4353635	1.00[ASN][1000 genomes]
rs4416201	1.00[ASN][1000 genomes]
rs4428008	1.00[ASN][1000 genomes]
rs4429457	1.00[ASN][1000 genomes]
rs4560098	0.92[ASN][1000 genomes]
rs4578846	1.00[ASN][1000 genomes]
rs4602212	0.92[ASN][1000 genomes]
rs4611627	1.00[ASN][1000 genomes]
rs4613259	1.00[ASN][1000 genomes]
rs4671468	1.00[ASN][1000 genomes]
rs4671470	1.00[ASN][1000 genomes]
rs4671471	1.00[ASN][1000 genomes]
rs4671472	1.00[ASN][1000 genomes]
rs4671473	1.00[ASN][1000 genomes]
rs4671474	1.00[ASN][1000 genomes]
rs4671475	1.00[ASN][1000 genomes]
rs4671476	1.00[ASN][1000 genomes]
rs4671479	1.00[ASN][1000 genomes]
rs4671480	1.00[ASN][1000 genomes]
rs4671481	1.00[ASN][1000 genomes]
rs4671482	1.00[ASN][1000 genomes]
rs4671483	1.00[ASN][1000 genomes]
rs4671484	1.00[ASN][1000 genomes]
rs4671485	1.00[ASN][1000 genomes]
rs4671487	1.00[ASN][1000 genomes]
rs4671488	1.00[ASN][1000 genomes]
rs4671494	0.89[ASN][1000 genomes]
rs58483312	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62177761	0.86[ASN][1000 genomes]
rs62177762	0.86[ASN][1000 genomes]
rs62177774	0.89[ASN][1000 genomes]
rs62177782	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62177783	0.86[ASN][1000 genomes]
rs62177789	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62177790	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62177791	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62177793	0.86[ASN][1000 genomes]
rs62177795	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62177797	1.00[ASN][1000 genomes]
rs62177820	0.86[ASN][1000 genomes]
rs62177821	0.86[ASN][1000 genomes]
rs62177824	1.00[ASN][1000 genomes]
rs62180269	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180275	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180276	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180308	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180310	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62180312	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62180314	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62180316	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180320	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180322	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180323	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180324	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180325	0.96[EUR][1000 genomes]
rs6545984	1.00[ASN][1000 genomes]
rs6545985	1.00[ASN][1000 genomes]
rs6545986	1.00[ASN][1000 genomes]
rs6545989	1.00[ASN][1000 genomes]
rs6545991	1.00[ASN][1000 genomes]
rs6545992	0.92[ASN][1000 genomes]
rs6545997	1.00[ASN][1000 genomes]
rs6704562	1.00[ASN][1000 genomes]
rs6705322	0.96[ASN][1000 genomes]
rs6705776	1.00[ASN][1000 genomes]
rs6706180	1.00[ASN][1000 genomes]
rs6706424	1.00[ASN][1000 genomes]
rs6708627	1.00[ASN][1000 genomes]
rs6708847	1.00[ASN][1000 genomes]
rs6709115	1.00[ASN][1000 genomes]
rs6711248	0.89[ASN][1000 genomes]
rs6713500	1.00[ASN][1000 genomes]
rs6714139	0.92[ASN][1000 genomes]
rs6714298	1.00[ASN][1000 genomes]
rs6717060	1.00[ASN][1000 genomes]
rs6718609	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6724044	1.00[ASN][1000 genomes]
rs6725694	1.00[ASN][1000 genomes]
rs6728844	1.00[ASN][1000 genomes]
rs6734468	1.00[ASN][1000 genomes]
rs6736788	1.00[ASN][1000 genomes]
rs6737820	1.00[ASN][1000 genomes]
rs6741817	0.92[ASN][1000 genomes]
rs6744720	1.00[ASN][1000 genomes]
rs6755183	0.92[ASN][1000 genomes]
rs6755412	0.86[ASN][1000 genomes]
rs6757463	1.00[ASN][1000 genomes]
rs6757487	1.00[ASN][1000 genomes]
rs7349440	1.00[ASN][1000 genomes]
rs7558796	0.92[ASN][1000 genomes]
rs7558922	1.00[ASN][1000 genomes]
rs7559137	1.00[ASN][1000 genomes]
rs7561802	1.00[ASN][1000 genomes]
rs7567088	1.00[ASN][1000 genomes]
rs7568224	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570649	1.00[ASN][1000 genomes]
rs7571697	0.92[ASN][1000 genomes]
rs7582434	1.00[ASN][1000 genomes]
rs7585664	1.00[ASN][1000 genomes]
rs7591562	1.00[ASN][1000 genomes]
rs7596446	1.00[ASN][1000 genomes]
rs7596580	1.00[ASN][1000 genomes]
rs7599736	0.92[ASN][1000 genomes]
rs7605113	0.89[ASN][1000 genomes]
rs7605319	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7608966	1.00[ASN][1000 genomes]
rs908621	1.00[ASN][1000 genomes]
rs908622	1.00[ASN][1000 genomes]
rs932171	0.92[ASN][1000 genomes]
rs932172	0.92[ASN][1000 genomes]
rs9967684	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv470468	chr2:63374063-63449512	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63346600-63399200	Weak transcription	Left Ventricle	heart
2	chr2:63364400-63384800	Weak transcription	Ovary	ovary
3	chr2:63370600-63400600	Weak transcription	Fetal Lung	lung
4	chr2:63371200-63396400	Weak transcription	Gastric	stomach
5	chr2:63372600-63391400	Weak transcription	Aorta	Aorta
6	chr2:63372800-63384000	Weak transcription	Adipose Nuclei	Adipose
7	chr2:63373400-63395600	Weak transcription	Primary B cells from cord blood	blood
8	chr2:63374600-63380200	Weak transcription	Dnd41	blood
9	chr2:63375200-63391400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:63376800-63379800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:63378800-63388800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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