Variant report

Variant	rs62177782
Chromosome Location	chr2:63450860-63450861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63446740..63449410-chr2:63450389..63452777,2	MCF-7	breast:

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10169209	0.86[ASN][1000 genomes]
rs10169292	0.86[ASN][1000 genomes]
rs10169579	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10173637	0.86[ASN][1000 genomes]
rs10203263	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207356	0.86[ASN][1000 genomes]
rs10209822	0.86[ASN][1000 genomes]
rs11125957	0.86[ASN][1000 genomes]
rs11125965	0.86[ASN][1000 genomes]
rs11675647	0.86[ASN][1000 genomes]
rs11684108	0.86[ASN][1000 genomes]
rs11685910	0.86[ASN][1000 genomes]
rs11686044	0.86[ASN][1000 genomes]
rs11691166	0.86[ASN][1000 genomes]
rs11691357	0.86[ASN][1000 genomes]
rs11691718	0.86[ASN][1000 genomes]
rs12151606	0.96[ASN][1000 genomes]
rs12618974	0.86[ASN][1000 genomes]
rs12623431	0.86[ASN][1000 genomes]
rs12713476	0.86[ASN][1000 genomes]
rs12713477	0.86[ASN][1000 genomes]
rs12713478	0.86[ASN][1000 genomes]
rs12994711	0.86[ASN][1000 genomes]
rs13020171	0.86[ASN][1000 genomes]
rs13387839	1.00[ASN][1000 genomes]
rs13411657	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417792	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13422328	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427868	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431765	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400686	0.86[ASN][1000 genomes]
rs1400687	0.86[ASN][1000 genomes]
rs1400688	0.86[ASN][1000 genomes]
rs1517401	0.86[ASN][1000 genomes]
rs1517402	0.86[ASN][1000 genomes]
rs1517404	0.86[ASN][1000 genomes]
rs1517405	0.86[ASN][1000 genomes]
rs1589092	0.86[ASN][1000 genomes]
rs1607203	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1607204	0.86[ASN][1000 genomes]
rs1607205	0.86[ASN][1000 genomes]
rs1607206	0.86[ASN][1000 genomes]
rs17348134	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17408652	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17408841	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17432684	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432775	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1850984	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030188	0.86[ASN][1000 genomes]
rs2030189	0.86[ASN][1000 genomes]
rs2090478	0.86[ASN][1000 genomes]
rs2090479	0.86[ASN][1000 genomes]
rs2176417	0.86[ASN][1000 genomes]
rs2263636	0.86[ASN][1000 genomes]
rs2292794	0.86[ASN][1000 genomes]
rs2292795	0.86[ASN][1000 genomes]
rs2421862	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2421881	0.86[ASN][1000 genomes]
rs2421883	0.86[ASN][1000 genomes]
rs2421884	0.86[ASN][1000 genomes]
rs2421886	0.86[ASN][1000 genomes]
rs2421887	0.86[ASN][1000 genomes]
rs2464042	0.86[ASN][1000 genomes]
rs2677436	0.82[ASN][1000 genomes]
rs2677437	0.86[ASN][1000 genomes]
rs2677438	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2677442	0.86[ASN][1000 genomes]
rs2699388	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2699389	0.86[ASN][1000 genomes]
rs2699390	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2699391	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2699399	0.86[ASN][1000 genomes]
rs2901580	0.86[ASN][1000 genomes]
rs2945032	0.86[ASN][1000 genomes]
rs2951185	0.86[ASN][1000 genomes]
rs2951192	0.86[ASN][1000 genomes]
rs4353635	0.86[ASN][1000 genomes]
rs4416201	0.86[ASN][1000 genomes]
rs4428008	0.86[ASN][1000 genomes]
rs4429457	0.86[ASN][1000 genomes]
rs4578846	0.86[ASN][1000 genomes]
rs4611627	0.86[ASN][1000 genomes]
rs4613259	0.86[ASN][1000 genomes]
rs4671468	0.86[ASN][1000 genomes]
rs4671470	0.86[ASN][1000 genomes]
rs4671471	0.86[ASN][1000 genomes]
rs4671472	0.86[ASN][1000 genomes]
rs4671473	0.86[ASN][1000 genomes]
rs4671474	0.86[ASN][1000 genomes]
rs4671475	0.86[ASN][1000 genomes]
rs4671476	0.86[ASN][1000 genomes]
rs4671479	0.86[ASN][1000 genomes]
rs4671480	0.86[ASN][1000 genomes]
rs4671481	0.86[ASN][1000 genomes]
rs4671482	0.86[ASN][1000 genomes]
rs4671483	0.86[ASN][1000 genomes]
rs4671484	0.86[ASN][1000 genomes]
rs4671485	0.86[ASN][1000 genomes]
rs4671487	0.86[ASN][1000 genomes]
rs4671488	0.86[ASN][1000 genomes]
rs58483312	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177761	1.00[ASN][1000 genomes]
rs62177762	1.00[ASN][1000 genomes]
rs62177774	0.96[ASN][1000 genomes]
rs62177783	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62177787	0.86[ASN][1000 genomes]
rs62177789	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177790	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177791	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177793	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62177795	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177797	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62177820	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62177821	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62177824	0.86[ASN][1000 genomes]
rs62180269	0.90[EUR][1000 genomes]
rs62180275	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62180276	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62180308	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62180310	0.91[EUR][1000 genomes]
rs62180312	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62180314	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62180316	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180317	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180320	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180322	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180323	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180324	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180325	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545984	0.86[ASN][1000 genomes]
rs6545985	0.86[ASN][1000 genomes]
rs6545986	0.86[ASN][1000 genomes]
rs6545989	0.86[ASN][1000 genomes]
rs6545991	0.86[ASN][1000 genomes]
rs6545997	0.86[ASN][1000 genomes]
rs6704562	0.86[ASN][1000 genomes]
rs6705322	0.82[ASN][1000 genomes]
rs6705776	0.86[ASN][1000 genomes]
rs6706180	0.86[ASN][1000 genomes]
rs6706424	0.86[ASN][1000 genomes]
rs6708627	0.86[ASN][1000 genomes]
rs6708847	0.86[ASN][1000 genomes]
rs6709115	0.86[ASN][1000 genomes]
rs6713500	0.86[ASN][1000 genomes]
rs6714298	0.86[ASN][1000 genomes]
rs6717060	0.86[ASN][1000 genomes]
rs6718609	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724044	0.86[ASN][1000 genomes]
rs6725694	0.86[ASN][1000 genomes]
rs6728844	0.86[ASN][1000 genomes]
rs6734468	0.86[ASN][1000 genomes]
rs6736788	0.86[ASN][1000 genomes]
rs6737820	0.86[ASN][1000 genomes]
rs6744720	0.86[ASN][1000 genomes]
rs6757463	0.86[ASN][1000 genomes]
rs6757487	0.86[ASN][1000 genomes]
rs7349440	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7558922	0.86[ASN][1000 genomes]
rs7559137	0.86[ASN][1000 genomes]
rs7561802	0.86[ASN][1000 genomes]
rs7567088	0.86[ASN][1000 genomes]
rs7568224	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7570649	0.86[ASN][1000 genomes]
rs7582434	0.86[ASN][1000 genomes]
rs7585664	0.86[ASN][1000 genomes]
rs7591562	0.86[ASN][1000 genomes]
rs7596446	0.86[ASN][1000 genomes]
rs7596580	0.86[ASN][1000 genomes]
rs7605319	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608966	0.86[ASN][1000 genomes]
rs908621	0.86[ASN][1000 genomes]
rs908622	0.86[ASN][1000 genomes]
rs9967684	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv535768	chr2:63413596-63631407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63448400-63459800	Weak transcription	Left Ventricle	heart
2	chr2:63449800-63452600	Weak transcription	Hela-S3	cervix

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